View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8502_low_10 (Length: 280)
Name: NF8502_low_10
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8502_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 5374724 - 5374479
Alignment:
| Q |
20 |
ttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttagcgcaaccattattatctgagcgaaagtagaagctgt |
119 |
Q |
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| T |
5374724 |
ttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttagcgcaaccattattatctgagcgaaagtagaagctgt |
5374625 |
T |
|
| Q |
120 |
ttagagtcaaagtagttaatgctggcaaattcagagaattcggaaataatactatcccatcttgatgaatagaaaggtcaagtgacgttaaagtttgaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374624 |
ttagagtcaaagtagttaatgctggcaaattcagagaattcggaaataatactatcccatcttgatgaatagaaaggtcaagtgacgttaaagtttgaga |
5374525 |
T |
|
| Q |
220 |
tgaaaataagcaagacggaagttgttgaatattacaagtgacacag |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374524 |
tgaaaataagcaagacggaagttgttgaatattacaagtgacacag |
5374479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 265
Target Start/End: Complemental strand, 5368961 - 5368722
Alignment:
| Q |
35 |
tgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttagcgcaaccattattatctgagcgaaagtagaagctgtttagagtcaaagtag |
134 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| || | | ||| ||||||||||||| |||||||||| |||| |
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| T |
5368961 |
tgtcgaatgatcaaagtattcaacttgttcaaggttgagaagggttcagcacaaccatcatcaccggagagaaagtagaagcttattagagtcaaggtag |
5368862 |
T |
|
| Q |
135 |
ttaatgctggcaaattcagagaattcggaaataatactatcccatct---------tgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaa |
225 |
Q |
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| T |
5368861 |
ttaatgctggcaaattcagagaactcggaaataataatttggcaggtagaatgcgatgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaa |
5368762 |
T |
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| Q |
226 |
taagcaagacggaagttgttgaatattacaagtgacacag |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5368761 |
taagcaagacggaagttgttgaatattacaagtgacacag |
5368722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 5362934 - 5362703
Alignment:
| Q |
40 |
aatgatcaaagtattcaacttcttcaaggctgagaagggtttagcgcaaccattattatctgagcgaaagtagaagctgtttagagtcaaagtagttaat |
139 |
Q |
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||||||||||||||||| || ||||||| |||||||||| |||||| |||||||| || |||||||||||||||| |||||||||| || |||||| |
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| T |
5362934 |
aatgatcaaagtattcagtttgttcaaggacgagaagggttcagcgcagccattattgtcagagcgaaagtagaagcctgttagagtcaaggtggttaat |
5362835 |
T |
|
| Q |
140 |
gctggcaaattcagagaattcggaaataatactatcccatcttg---------atgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagc |
230 |
Q |
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|||||||||||||||||| |||||||||||| | ||| || || ||||| ||||||||||| |||||||| ||||||||||||||||||| |
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| T |
5362834 |
gctggcaaattcagagaactcggaaataatattttccaatgatggatataatagtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagc |
5362735 |
T |
|
| Q |
231 |
aagacggaagttgttgaatattacaagtgaca |
262 |
Q |
| |
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|||| ||||||||||||||| |||| ||||| |
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| T |
5362734 |
tagactgaagttgttgaatatcacaactgaca |
5362703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 5368150 - 5367919
Alignment:
| Q |
40 |
aatgatcaaagtattcaacttcttcaaggctgagaagggtttagcgcaaccattattatctgagcgaaagtagaagctgtttagagtcaaagtagttaat |
139 |
Q |
| |
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||||||||||||||||| || ||||||| |||||||||| || ||| |||||||| || |||||||||||||||| ||||||| || || |||||| |
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| T |
5368150 |
aatgatcaaagtattcagtttgttcaaggacgagaagggttcagtgcagccattattgtcagagcgaaagtagaagcctgttagagttaaggtggttaat |
5368051 |
T |
|
| Q |
140 |
gctggcaaattcagagaattcggaaataatactatcccatcttg---------atgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagc |
230 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||| || || ||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
5368050 |
gctggcaaattcagagaactcggaaataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagc |
5367951 |
T |
|
| Q |
231 |
aagacggaagttgttgaatattacaagtgaca |
262 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||| |
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| T |
5367950 |
tagactgaagttgttgaatatcacaactgaca |
5367919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 8400208 - 8400273
Alignment:
| Q |
185 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata |
250 |
Q |
| |
|
|||| |||||||| ||| || |||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
8400208 |
tgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
8400273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 5356297 - 5356245
Alignment:
| Q |
35 |
tgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttagcgca |
87 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
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| T |
5356297 |
tgtcgaatgatcaaagtattcaacttgctcaaggcggagaagggttcagcgca |
5356245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 7119180 - 7119152
Alignment:
| Q |
142 |
tggcaaattcagagaattcggaaataata |
170 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7119180 |
tggcaaattcagagaattcggaaataata |
7119152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 25597346 - 25597310
Alignment:
| Q |
132 |
tagttaatgctggcaaattcagagaattcggaaataa |
168 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |
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| T |
25597346 |
tagttaatgctggcaatttcagagatttcggaaataa |
25597310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 30054957 - 30055021
Alignment:
| Q |
185 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaat |
249 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
30054957 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat |
30055021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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