View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8502_low_11 (Length: 274)

Name: NF8502_low_11
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8502_low_11
NF8502_low_11
[»] chr6 (2 HSPs)
chr6 (17-255)||(20614528-20614772)
chr6 (51-157)||(15300044-15300152)
[»] chr3 (3 HSPs)
chr3 (1-245)||(13760158-13760399)
chr3 (48-98)||(9129623-9129673)
chr3 (48-98)||(9137730-9137780)
[»] chr4 (1 HSPs)
chr4 (50-245)||(27980436-27980625)
[»] chr8 (2 HSPs)
chr8 (50-157)||(22255235-22255344)
chr8 (199-245)||(41344071-41344117)
[»] chr5 (3 HSPs)
chr5 (199-242)||(8274536-8274579)
chr5 (193-245)||(22785719-22785771)
chr5 (120-157)||(1416604-1416641)
[»] chr2 (1 HSPs)
chr2 (1-101)||(18684575-18684675)
[»] chr1 (1 HSPs)
chr1 (196-242)||(45637913-45637959)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 20614772 - 20614528
Alignment:
Q  17 ctaataatgtagcaaccctagcaagggcaataactacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaactttgaaaaacagacttc 116  Q
    |||||||||| |||||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20614772 ctaataatgttgcaaccctggcaagggcattagctacctcatttgtttgtcgccgattaaactcaactttaaagtttgtgaactttgaaaaactgacttc 20614673  T
Q  117 taaaagcggaaataataagtccaaattca------gtaatatctggatgagggtgattgaatcggaagcatctgcaataatgtttgaatccaagccaaaa 210  Q
    ||||||||||||||| |||||||||||||      |||||||||||| |||||||||||||| |||||  |||||||||||||||||||||||  |||||    
T  20614672 taaaagcggaaataacaagtccaaattcagtaacagtaatatctggacgagggtgattgaattggaagtgtctgcaataatgtttgaatccaacgcaaaa 20614573  T
Q  211 tcaacattatcaaacctcatatcacttaaccattcgattaataaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20614572 tcaacattatcaaacctcatatcacttaaccattcgattaataaa 20614528  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 15300044 - 15300152
Alignment:
Q  51 tacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaactttgaa--aaacagacttctaaaagcggaaataataagtccaaattcagta 148  Q
    ||||||||||  |||| |||||||||||||||| ||||||||||| ||||| ||   ||||| ||||||  ||||||| |||||||||||||||||||||    
T  15300044 tacctcatttaattgttgccgattaaactcaaccttaaagtttgtaaacttcgatctaaacatacttctgcaagcggagataataagtccaaattcagta 15300143  T
Q  149 atatctgga 157  Q
    |||| ||||    
T  15300144 atatatgga 15300152  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 13760158 - 13760399
Alignment:
Q  1 taagtggtgggactaactaataatgtagcaaccctagcaagggcaataactacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaact 100  Q
    ||||||||||||||| |||||||||  ||| |||  |||||| |   | |||||||||||||||||||| || |||||||||| ||| ||||||| ||||    
T  13760158 taagtggtgggactagctaataatggggcagccccggcaaggacgtgagctacctcatttgcttgtcgcagagtaaactcaaccttagagtttgtaaact 13760257  T
Q  101 ttgaa--aaacagacttctaaaagcggaaataataagtccaaattcagtaatatctggatgagggtgattgaatcggaagcatctgcaataatgtttgaa 198  Q
     ||||   ||||  |||||  |||| || |||||||| ||||||||||||| ||||||||||||||| ||||     | |||||  || |||| || |||    
T  13760258 gtgaactcaacaaccttctgcaagcagagataataagaccaaattcagtaacatctggatgagggtggttga-----aggcatccacagtaattttggaa 13760352  T
Q  199 tccaagccaaaatcaacattatcaaacctcatatcacttaaccattc 245  Q
    |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  13760353 tccaatgcaaaatcaacattgtcaaacctcatatcacttaaccattc 13760399  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 9129623 - 9129673
Alignment:
Q  48 aactacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaa 98  Q
    |||||||||||||| |||||||| |||||| ||||||||  ||||||||||    
T  9129623 aactacctcatttgtttgtcgcctattaaattcaactttcgagtttgtgaa 9129673  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 9137730 - 9137780
Alignment:
Q  48 aactacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaa 98  Q
    |||||||||||||| |||||||| |||||| ||||||||  ||||||||||    
T  9137730 aactacctcatttgtttgtcgcctattaaattcaactttcgagtttgtgaa 9137780  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 27980436 - 27980625
Alignment:
Q  50 ctacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaactttgaa--aaacagacttctaaaagcggaaataataagtccaaattcagt 147  Q
    |||||| ||||  |||||||||||||||| |||||||| ||||||||||||| |||  |||||||||| |  ||||  ||||||||||||||||||||||    
T  27980436 ctacctgatttatttgtcgccgattaaacccaactttagagtttgtgaacttcgaattaaacagacttttgcaagcaaaaataataagtccaaattcagt 27980535  T
Q  148 aatatctggatgagggtgattgaatcggaagcatctgcaataatgtttgaatccaagccaaaatcaacattatcaaacctcatatcacttaaccattc 245  Q
    ||||| |||| |  |||| ||||     ||||||||||     | ||| |||||||  |||  |||||||||||||||||||||||||||||||||||    
T  27980536 aatatttggacggtggtggttga-----aagcatctgc---ggttttttaatccaaagcaaggtcaacattatcaaacctcatatcacttaaccattc 27980625  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 22255235 - 22255344
Alignment:
Q  50 ctacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaactttga--aaaacagacttctaaaagcggaaataataagtccaaattcagt 147  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||   ||||| |||| |  ||||||| ||||||||||||||||| ||    
T  22255235 ctacctcatttgcttgtcgccgattaaactcaaccttagagtttgtaaacttcgacctaaacatacttttgcaagcggagataataagtccaaattctgt 22255334  T
Q  148 aatatctgga 157  Q
    ||||||||||    
T  22255335 aatatctgga 22255344  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 41344117 - 41344071
Alignment:
Q  199 tccaagccaaaatcaacattatcaaacctcatatcacttaaccattc 245  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  41344117 tccaaggcaaaatcaacattatcaaatctcatatcacttaaccattc 41344071  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 8274579 - 8274536
Alignment:
Q  199 tccaagccaaaatcaacattatcaaacctcatatcacttaacca 242  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  8274579 tccaaggcaaaatcaacattatcaaatctcatatcacttaacca 8274536  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 22785771 - 22785719
Alignment:
Q  193 tttgaatccaagccaaaatcaacattatcaaacctcatatcacttaaccattc 245  Q
    |||||||||||  ||||||| ||||||||||| ||||||||||||| ||||||    
T  22785771 tttgaatccaatgcaaaatcgacattatcaaatctcatatcacttagccattc 22785719  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 1416641 - 1416604
Alignment:
Q  120 aagcggaaataataagtccaaattcagtaatatctgga 157  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  1416641 aagcggagataataagtccaaattcagtaatatatgga 1416604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18684575 - 18684675
Alignment:
Q  1 taagtggtgggactaactaataatgtagcaaccctagcaagggcaataactacctcatttgcttgtcgccgattaaactcaactttaaagtttgtgaact 100  Q
    |||||||||||||||||||||| ||| ||| ||| | | |  ||   | |||||||||| ||||||| |||||||||||  |||||| ||||||||||||    
T  18684575 taagtggtgggactaactaatattgtggcagccccaacgaacgcgtgagctacctcattcgcttgtctccgattaaacttgactttagagtttgtgaact 18684674  T
Q  101 t 101  Q
    |    
T  18684675 t 18684675  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 45637959 - 45637913
Alignment:
Q  196 gaatccaagccaaaatcaacattatcaaacctcatatcacttaacca 242  Q
    ||||||||| ||||||| |||||||| || |||||||||||||||||    
T  45637959 gaatccaaggcaaaatccacattatcgaatctcatatcacttaacca 45637913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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