View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8502_low_12 (Length: 260)

Name: NF8502_low_12
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8502_low_12
NF8502_low_12
[»] chr1 (3 HSPs)
chr1 (18-254)||(7582607-7582843)
chr1 (94-212)||(7098445-7098563)
chr1 (18-72)||(7098585-7098639)
[»] chr5 (11 HSPs)
chr5 (18-210)||(17981952-17982142)
chr5 (91-212)||(30434852-30434973)
chr5 (92-212)||(30243325-30243445)
chr5 (18-212)||(29871216-29871410)
chr5 (92-212)||(30339478-30339598)
chr5 (18-212)||(4380688-4380882)
chr5 (92-209)||(30678121-30678241)
chr5 (18-151)||(30059448-30059581)
chr5 (92-207)||(30399100-30399215)
chr5 (92-121)||(17419102-17419131)
chr5 (168-212)||(30714463-30714507)
[»] chr4 (2 HSPs)
chr4 (20-121)||(13615725-13615826)
chr4 (96-207)||(20297560-20297671)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 7582607 - 7582843
Alignment:
Q  18 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7582607 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaa 7582706  T
Q  118 gtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaagacctgagag 217  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7582707 gtggaaaaaaaggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaagacctgagag 7582806  T
Q  218 tacggaaatgtactaatgagttgctgatgtccatctc 254  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  7582807 tacggaaatgtactaatgagttgctgaagtcaatctc 7582843  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 7098563 - 7098445
Alignment:
Q  94 ccaaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtc 193  Q
    ||||||||||||||  ||||||||||||        |||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  7098563 ccaaacttagagggactgttgaaagtggaaagagatgagacgtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtc 7098464  T
Q  194 ttccatctgttaaagacct 212  Q
    |||||||||||| ||||||    
T  7098463 ttccatctgttagagacct 7098445  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 7098639 - 7098585
Alignment:
Q  18 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgag 72  Q
    ||||||| ||||||||||||||||| |||| || || |||||||||||||| |||    
T  7098639 ggatgataatgaatttcacaatggtatggaggtaaggattttcccatctctagag 7098585  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 17982142 - 17981952
Alignment:
Q  18 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaa 117  Q
    |||||||||||||||| | |||||| ||||  ||| || |||||||||||| ||| |||| | | |  || | ||| |||||||||||||  ||||||||    
T  17982142 ggatgatgatgaatttgaaaatggtgtggagatgataaatttcccatctctggagatactcacattaaataatttatcaaacttagagggtctgttgaaa 17982043  T
Q  118 gtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaagac 210  Q
    ||||       |||||  | |||||||||||||||||||||||||   |||||   |||||||||||||||||| ||||||||||||||||||    
T  17982042 gtggaaaga--ggagaaatgtccttgtctttctattttgaacatccgaaattgtgataaacttgaacttccgtgccttccatctgttaaagac 17981952  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 30434973 - 30434852
Alignment:
Q  91 ttaccaaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgt 190  Q
    ||||||||| |||||||||| ||||||||||       ||||||||||||||||||||||| |||| | |||   || ||||||||||||| ||| || |    
T  30434973 ttaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccat 30434874  T
Q  191 gtcttccatctgttaaagacct 212  Q
    ||||||||||| ||||||||||    
T  30434873 gtcttccatctcttaaagacct 30434852  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 30243325 - 30243445
Alignment:
Q  92 taccaaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtg 191  Q
    |||||||| |||||||||| ||||||||||       ||||||||||||||||||||||| |||| | |||   || ||||||||||||| ||| || ||    
T  30243325 taccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatg 30243424  T
Q  192 tcttccatctgttaaagacct 212  Q
    |||||||||| ||||||||||    
T  30243425 tcttccatctcttaaagacct 30243445  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 29871410 - 29871216
Alignment:
Q  18 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaa 117  Q
    |||||||||||||| |||  ||||| |||| ||||| |||||||||||||| |||| |||  || |  || | ||||||||| ||||||| || ||||||    
T  29871410 ggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctctggaggaactcgtattatataagttaccaaacatagagggtttattgaaa 29871311  T
Q  118 gtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaagacct 212  Q
    || |       ||||||||||||||||||||||| |||| | ||    || ||||||||| ||| ||| || |||||||||||| ||||||||||    
T  29871310 gttgaaagaggggagatgtttccttgtctttctagtttggatatttggaaatgccctaaaattggactgccatgtcttccatctcttaaagacct 29871216  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 30339478 - 30339598
Alignment:
Q  92 taccaaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtg 191  Q
    |||||||| |||||||||| ||||||||||       |||||||||||||||||||||||  ||||  |||  | ||||||||||| ||| ||| || ||    
T  30339478 taccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatg 30339577  T
Q  192 tcttccatctgttaaagacct 212  Q
    |||||||||| ||||||||||    
T  30339578 tcttccatctcttaaagacct 30339598  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 4380882 - 4380688
Alignment:
Q  18 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaa 117  Q
    |||||||||||||||| |  ||||| |||| |||||  ||||||||||||| ||||||||   | |  ||    |||||||| || ||||||| ||||||    
T  4380882 ggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctctggaggtactcgaattatattgtctaccaaacataaaggggttattgaaa 4380783  T
Q  118 gtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaagacct 212  Q
    ||||       |||| ||||||||||||||||||  ||| | ||| | |||||||||||||||| ||| || |||| ||||||| ||||| ||||    
T  4380782 gtggaaagaggggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgtcatccatctcttaaacacct 4380688  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 30678121 - 30678241
Alignment:
Q  92 taccaaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaa---cttgaacttcc 188  Q
    |||||||| |||||||||| ||||||||||       |||||||||||||||||||||||  ||| | |||   ||||||||||||   |||| ||| ||    
T  30678121 taccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaggttggatatctggaattgccctaaactgcttggactgcc 30678220  T
Q  189 gtgtcttccatctgttaaaga 209  Q
     |||||||||||| |||||||    
T  30678221 atgtcttccatctcttaaaga 30678241  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 30059581 - 30059448
Alignment:
Q  18 ggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaa 117  Q
    |||||||||||||| | |  ||||| |||| |||||  ||||||||||||| |||| |||  || |  || | ||||||||| ||||||| || ||||||    
T  30059581 ggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggaactcgtattatatcagttaccaaacatagagggtttattgaaa 30059482  T
Q  118 gtggnnnnnnnggagatgtttccttgtctttcta 151  Q
    ||||       |||||||||||||||||||||||    
T  30059481 gtggaaagaggggagatgtttccttgtctttcta 30059448  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 30399215 - 30399100
Alignment:
Q  92 taccaaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtg 191  Q
    |||||||| |||||||||| ||||||||||       ||||||||||||||||||||||   ||||  ||||    |||||||||||||| | | || ||    
T  30399215 taccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatg 30399116  T
Q  192 tcttccatctgttaaa 207  Q
    |||||||||| |||||    
T  30399115 tcttccatctcttaaa 30399100  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 17419102 - 17419131
Alignment:
Q  92 taccaaacttagaggggttgttgaaagtgg 121  Q
    ||||||||||||||||||||||||||||||    
T  17419102 taccaaacttagaggggttgttgaaagtgg 17419131  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 30714463 - 30714507
Alignment:
Q  168 ttgccctaaacttgaacttccgtgtcttccatctgttaaagacct 212  Q
    |||||||||||||| ||| || |||||||||||| ||||||||||    
T  30714463 ttgccctaaacttggactgccatgtcttccatctcttaaagacct 30714507  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 13615826 - 13615725
Alignment:
Q  20 atgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaagt 119  Q
    |||| ||||||||| | |||||| ||||  ||||||||||||||||||| |||| ||| ||||| || |||||||||||||||||  ||||||| |||||    
T  13615826 atgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggaactaataatagaagacttaccaaacttagataggttgttaaaagt 13615727  T
Q  120 gg 121  Q
    ||    
T  13615726 gg 13615725  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 20297560 - 20297671
Alignment:
Q  96 aaacttagaggggttgttgaaagtggnnnnnnnggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtctt 195  Q
    |||| |||||||||| ||||||||||       |||||||||||||||||||||||  ||||| |||  ||| ||||||||||||| | | || ||||||    
T  20297560 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtctt 20297659  T
Q  196 ccatctgttaaa 207  Q
    |||||| |||||    
T  20297660 ccatctcttaaa 20297671  T

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