View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8502_low_2 (Length: 427)

Name: NF8502_low_2
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8502_low_2
NF8502_low_2
[»] chr6 (21 HSPs)
chr6 (1-400)||(5434468-5434867)
chr6 (3-184)||(5278851-5279032)
chr6 (3-120)||(5689841-5689958)
chr6 (3-120)||(5177024-5177141)
chr6 (71-307)||(5354109-5354345)
chr6 (17-119)||(5345157-5345259)
chr6 (36-179)||(5157251-5157394)
chr6 (17-110)||(5243605-5243698)
chr6 (70-132)||(5073578-5073640)
chr6 (218-308)||(5350828-5350918)
chr6 (218-323)||(5157134-5157239)
chr6 (215-307)||(5397444-5397536)
chr6 (36-179)||(5128040-5128183)
chr6 (218-309)||(5426350-5426441)
chr6 (218-308)||(5102165-5102255)
chr6 (218-308)||(5137217-5137307)
chr6 (36-166)||(5350703-5350833)
chr6 (218-307)||(5097178-5097267)
chr6 (86-179)||(5397315-5397408)
chr6 (36-119)||(5097023-5097106)
chr6 (218-320)||(5448021-5448123)
[»] chr5 (1 HSPs)
chr5 (147-308)||(8878026-8878187)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 5434468 - 5434867
Alignment:
Q  1 atgaactgtcgtctacttccaaccagctttcagggcttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataatttt 100  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  5434468 atgaactgtcgtctatttccaaccagctttcagggcttcaaagtctatggatagattgtaggtcggaatttcaactttctgaagatgcaaagataatttt 5434567  T
Q  101 ggatgccttacatgccacaaactctaaagaatctgtacccactacaactacatcacaagtatcaaatatgattacttctgcattggttcaaagctgcagt 200  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  5434568 ggatgccttacatgccacaaactctaaagaatccgtaccgactacaactacatcacaagtatcaaatatgactacttctacattggttcaaagctgcagt 5434667  T
Q  201 gaagtgcacgttttaggatcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttac 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5434668 gaagtgcacgttttaggatcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaactcaccaacattctcgaagagatcattttac 5434767  T
Q  301 aggtttgaaatgctctctctatccccttattttatgattgctttgtgtgtatcacatcatatatttgaattctatagcgtgtgcgtgtctatataaatat 400  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5434768 aggtttgaaatgctctctctatccccttattttatgtttgctttgtgtgtatcacatcatatatttgaattctatagcgtgtgcgtgtctatatatatat 5434867  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 5278851 - 5279032
Alignment:
Q  3 gaactgtcgtctacttccaaccagctttcagggcttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttgg 102  Q
    |||||||| |||| |||| |||| |||||| |||||||||||||||||||||||||| | || ||| |||||||||||| || ||||||||| |||||||    
T  5278851 gaactgtcatctatttccgaccacctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttgg 5278950  T
Q  103 atgccttacatgccacaaactctaaagaatctgtacccactacaactacatcacaagtatcaaatatgattacttctgcatt 184  Q
    |||| ||| |||||||||  ||||| |||  ||   | ||| |  |||| |||||||||||||||||||  |||||||||||    
T  5278951 atgctttatatgccacaatttctaaggaaattgattcgacttctgctacttcacaagtatcaaatatgaacacttctgcatt 5279032  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 5689958 - 5689841
Alignment:
Q  3 gaactgtcgtctacttccaaccagctttcagggcttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttgg 102  Q
    |||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||| | || ||| ||||||||||||||| ||||||||| |||||||    
T  5689958 gaactgtcatctatttccaaccacctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgaagatgcaaaaatcattttgg 5689859  T
Q  103 atgccttacatgccacaa 120  Q
    |||| ||| | |||||||    
T  5689858 atgctttatacgccacaa 5689841  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 5177024 - 5177141
Alignment:
Q  3 gaactgtcgtctacttccaaccagctttcagggcttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttgg 102  Q
    |||||||| |||| |||| |||| |||||| |||||||||||||||||||||||||| | || ||| |||||||||||| || ||||||||| |||||||    
T  5177024 gaactgtcatctatttccgaccacctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttgg 5177123  T
Q  103 atgccttacatgccacaa 120  Q
    |||| ||| |||||||||    
T  5177124 atgctttatatgccacaa 5177141  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 307
Target Start/End: Complemental strand, 5354345 - 5354109
Alignment:
Q  71 tcaactttctgaagctgcaaaaataattttggatgccttacatgccacaaactctaaagaatctgtacccactacaactacatcacaagtatcaaatatg 170  Q
    ||||||||||  || |||||||| ||||||| ||||| || |||||||    ||||| |||| || | | ||| ||||||||||||| | | |  |||||    
T  5354345 tcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatg 5354246  T
Q  171 attacttctgcattggttcaaagctgcagtgaagtgcacgttttaggatcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaac 270  Q
    |  |||| | ||||  ||||| | |||||||||||||| |||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||     
T  5354245 aagacttttacattaattcaacgatgcagtgaagtgcatgtttcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaag 5354146  T
Q  271 tcgccaacattctcaaagagatcattttacaggtttg 307  Q
    || | || ||||| |||||||  ||||| ||||||||    
T  5354145 tcactaatattctgaaagagaaaattttgcaggtttg 5354109  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 5345157 - 5345259
Alignment:
Q  17 ttccaaccagctttcagggcttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttggatgccttacatgcc 116  Q
    ||||||||| |||||| |||||||||||||||||||||||||| | || ||| | ||||||||||||| |||| |||| ||||||||||| ||| | |||    
T  5345157 ttccaaccacctttcaaggcttcgaagtctatgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgcc 5345256  T
Q  117 aca 119  Q
    |||    
T  5345257 aca 5345259  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 5157394 - 5157251
Alignment:
Q  36 cttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttggatgccttacatgccacaaactctaaagaatct- 134  Q
    ||||||||||||||||| ||||| || |||||| ||||||||||| | | ||||  |||||||||||||||| |  |||||||||| ||| |||||| |     
T  5157394 cttcgaagtctatgggtggagtgcagctcggaacttcaactttctcatgatgcagcaataattttggatgccctgtatgccacaaattct-aagaatttg 5157296  T
Q  135 gtacccactacaactacatcacaagtatcaaatatgattacttct 179  Q
    | ||| |||||| ||||||||||| |||||||| ||| |||||||    
T  5157295 gaaccaactacagctacatcacaattatcaaatgtgactacttct 5157251  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 5243698 - 5243605
Alignment:
Q  17 ttccaaccagctttcagggcttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttggatgcctta 110  Q
    ||||| ||| |||||| |||||||||| |||| |||||||||| | || ||| | ||||||||||||| |||| |||| |||||||||||||||    
T  5243698 ttccatccacctttcaaggcttcgaagcctattggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgcctta 5243605  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 5073640 - 5073578
Alignment:
Q  70 ttcaactttctgaagctgcaaaaataattttggatgccttacatgccacaaactctaaagaat 132  Q
    ||||||||||| ||| |||| ||| |||||||||||||||| |||||||||| ||||||||||    
T  5073640 ttcaactttctcaagatgcagaaagaattttggatgccttatatgccacaaattctaaagaat 5073578  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 308
Target Start/End: Original strand, 5350828 - 5350918
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttga 308  Q
    ||||||||||||||| || |||| ||||||||||||  ||||||||||| ||  | | || ||||| |||||||| |||||||||||||||    
T  5350828 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagagataattttacaggtttga 5350918  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 5157239 - 5157134
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttgaaatgctctc 317  Q
    ||||||||||||||  || |||| ||||||||||||  ||||||||||| ||  | | || ||||| ||||| || |||||||||||||| ||| |||||    
T  5157239 atcaaaacattcctcgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttgcaatactctc 5157140  T
Q  318 tctatc 323  Q
    ||||||    
T  5157139 tctatc 5157134  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 5397444 - 5397536
Alignment:
Q  215 aggatcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttg 307  Q
    ||||||||||||||||   || |||| ||||||||||||| ||| ||||||  || | ||||| ||||| |||||||| ||||||||||||||    
T  5397444 aggatcaaaacattccccgaagtctcttttaattcaaatgggaacgaattgtcaagttgccaatattctgaaagagataattttacaggtttg 5397536  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 5128183 - 5128040
Alignment:
Q  36 cttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttggatgccttacatgccacaaactctaaagaatctg 135  Q
    ||||||||||| ||| | ||||| || || ||| ||||||||||| | | ||||  ||||||||||||||||||  |||||||||| | ||| || |  |    
T  5128183 cttcgaagtctttggatggagtgcagctcagaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccacaaattataaggagttgg 5128084  T
Q  136 tacccactacaactacatcacaagtatcaaatatgattacttct 179  Q
     ||  ||| ||| ||||||||||||||||| ||||| |||||||    
T  5128083 aacaaactgcaagtacatcacaagtatcaattatgactacttct 5128040  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 5426350 - 5426441
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttgaa 309  Q
    ||||||||||||||| || |||| ||||||||||||  ||||||||||| ||  | |  | ||||| |||||||| ||||||||||||||||    
T  5426350 atcaaaacattccttaaaatctcttttaattcaaattggaatgaattgccaagcctctgatattctgaaagagataattttacaggtttgaa 5426441  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 5102255 - 5102165
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttga 308  Q
    ||||||||||||||| || |||| ||||||||||||  ||||||||||| ||  | | || ||||| ||||| || |||||||||||||||    
T  5102255 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttga 5102165  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 5137307 - 5137217
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttga 308  Q
    ||||||||||||||| || |||| ||||||||||||  ||||||||||| ||  | | || ||||| ||||| || |||||||||||||||    
T  5137307 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttga 5137217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 5350703 - 5350833
Alignment:
Q  36 cttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttggatgccttacatgccacaaactctaaagaatctg 135  Q
    |||| |||||| || || |||||||| |||||| ||||||||||| | | ||||  ||||||||||||||||||  |||||||||| | ||| || |  |    
T  5350703 cttcaaagtctttgtgtggagtgtagctcggaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccacaaattataaggagttgg 5350802  T
Q  136 tacccactacaactacatcacaagtatcaaa 166  Q
     | | |||||| |||||||| ||||||||||    
T  5350803 aatcaactacagctacatcaaaagtatcaaa 5350833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 5097178 - 5097267
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttg 307  Q
    |||| ||||||||||||| |||| ||||||||||||| ||| ||||||| || || |||| ||| | |||||||  ||| ||||||||||    
T  5097178 atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg 5097267  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 5397315 - 5397408
Alignment:
Q  86 tgcaaaaataattttggatgccttacatgccacaaactctaaagaatctgtacccactacaactacatcacaagtatcaaatatgattacttct 179  Q
    |||||||||||||||||||||  ||  ||| ||||| ||||||||||  | | | |||| |||||||||||||| ||| ||||||| |||||||    
T  5397315 tgcaaaaataattttggatgctctatgtgctacaaattctaaagaattggaatcaactaaaactacatcacaagaatccaatatgactacttct 5397408  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 5097023 - 5097106
Alignment:
Q  36 cttcgaagtctatgggtagagtgtaggtcggaatttcaactttctgaagctgcaaaaataattttggatgccttacatgccaca 119  Q
    ||||||||||| ||||| ||||| || || ||| ||||||||||| | | |||   ||||||||||||||||||| ||||||||    
T  5097023 cttcgaagtctttgggtggagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca 5097106  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 320
Target Start/End: Original strand, 5448021 - 5448123
Alignment:
Q  218 atcaaaacattccttcaactctcatttaattcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttgaaatgctctc 317  Q
    |||||| |||| ||| || |||| ||||||||||||  ||||||||||| || || |  | ||||| |||||||| ||||||||||| ||| || |||||    
T  5448021 atcaaaccatttcttgaagtctcttttaattcaaattggaatgaattgcgaagtcactgatattctgaaagagataattttacaggtctgacattctctc 5448120  T
Q  318 tct 320  Q
    |||    
T  5448121 tct 5448123  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 308
Target Start/End: Original strand, 8878026 - 8878187
Alignment:
Q  147 actacatcacaagtatcaaatatgattacttctgcattggttcaaagctgcagtgaagtgcacgttttaggatcaaaacattccttcaactctcatttaa 246  Q
    ||||||||||||||||||||||| |  |||||||||||  |||||  ||||||| ||||||| |||| ||| ||||||  |||| | || ||||  || |    
T  8878026 actacatcacaagtatcaaatataaaaacttctgcattaattcaattctgcagtcaagtgcatgtttcaggttcaaaaagttccctgaagtctctattta 8878125  T
Q  247 ttcaaatgagaatgaattgcaaactcgccaacattctcaaagagatcattttacaggtttga 308  Q
    |||||||| ||||||||||| || |  | || | ||| |||||||  |||||||||||||||    
T  8878126 ttcaaatgggaatgaattgccaattaactaatactctgaaagagaaaattttacaggtttga 8878187  T

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