View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8502_low_3 (Length: 423)
Name: NF8502_low_3
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8502_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 30049271 - 30048875
Alignment:
| Q |
5 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049271 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
30049172 |
T |
|
| Q |
105 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049171 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
30049072 |
T |
|
| Q |
205 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgttcctcaacactcttttgcc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30049071 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcc |
30048972 |
T |
|
| Q |
305 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048971 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
30048875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 68 - 401
Target Start/End: Complemental strand, 7161549 - 7161232
Alignment:
| Q |
68 |
agctgcagcagcaatatactcagcttcagctgaggattgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaaca |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161549 |
agctgcagcagcaatatactcagcttcagctgaggattgagcaaccacgtcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaaca |
7161450 |
T |
|
| Q |
168 |
taaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161449 |
taaccacttgtgcttttagaatcatcaaccgatccagcccaat----------------ttcaatcttaccatcacctttgttgtaccaaataccaaaat |
7161366 |
T |
|
| Q |
268 |
cagtagtacctcttatgttcctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacat |
367 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7161365 |
cagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcatgaaccttgaaagcaaactagtagagaacat |
7161266 |
T |
|
| Q |
368 |
caaatctggtctagttgcagtcaagtaaagaaga |
401 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
7161265 |
caaatctagtctagttgcagtcaagtaaagaaga |
7161232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 7162224 - 7162157
Alignment:
| Q |
5 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctg |
72 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7162224 |
ttcctcttgtatatgattcagatcactcaataccattttgatccaaatagcttgatttgatgcagctg |
7162157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 18014651 - 18014622
Alignment:
| Q |
189 |
tcatcaatagatccagcccaatcactatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18014651 |
tcatcaatagatccagcccaatcactatca |
18014622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Original strand, 196744 - 197140
Alignment:
| Q |
5 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196744 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
196843 |
T |
|
| Q |
105 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196844 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
196943 |
T |
|
| Q |
205 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgttcctcaacactcttttgcc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
196944 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcc |
197043 |
T |
|
| Q |
305 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197044 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
197140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 3945525 - 3945129
Alignment:
| Q |
5 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945525 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
3945426 |
T |
|
| Q |
105 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945425 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
3945326 |
T |
|
| Q |
205 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgttcctcaacactcttttgcc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3945325 |
cccaatcactatcaacaaagccttcaatcttactatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcc |
3945226 |
T |
|
| Q |
305 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945225 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
3945129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Original strand, 39949905 - 39950301
Alignment:
| Q |
5 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949905 |
ttcctcttgtacatgattcagatcgctcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
39950004 |
T |
|
| Q |
105 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39950005 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaacagatccag |
39950104 |
T |
|
| Q |
205 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgttcctcaacactcttttgcc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39950105 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcc |
39950204 |
T |
|
| Q |
305 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950205 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
39950301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 22365153 - 22364757
Alignment:
| Q |
5 |
ttcctcttgtacatgattcagatcactcaatacctttttgatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365153 |
ttcctcttgtacatgattcagatcactcaataccttttttatccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggat |
22365054 |
T |
|
| Q |
105 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22365053 |
tgagcaaccacatcttgttttttggaattccatgaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaacagatccag |
22364954 |
T |
|
| Q |
205 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgttcctcaacactcttttgcc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22364953 |
cccaatcactatcaacaaagccttcaatcttaccatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcc |
22364854 |
T |
|
| Q |
305 |
cacacctaagtgtgttacacttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364853 |
cacacctaagtgtgttacacttggtgaatgcatgaaccttgaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaaga |
22364757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 22135112 - 22134942
Alignment:
| Q |
47 |
ccaaatagcttgatttgatgcagctgcagcagcaatatactcagcttcagctgaggattgagcaaccacatcttgttttttggaattccatgaaaataca |
146 |
Q |
| |
|
|||||||||||| |||| |||||||| || | |||||| ||||| || || | |||||||| || | || ||||| || || ||||| || || | | |
|
|
| T |
22135112 |
ccaaatagcttggtttgcagcagctgctgctgaaatatattcagcctctgccgtagattgagctacaatctcctgtttctttgacttccaagagaaaata |
22135013 |
T |
|
| Q |
147 |
ccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatc |
217 |
Q |
| |
|
||| | |||| |||||||||||||||| ||||| || |||||||||| | |||||||||||||||||| |
|
|
| T |
22135012 |
ccattgccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
22134942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 22134833 - 22134777
Alignment:
| Q |
323 |
acttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtct |
379 |
Q |
| |
|
|||||| || ||||| ||||| ||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
22134833 |
acttggagattgcataaaccttgaaagcaaacttgtagaaaacatcaaatctggtct |
22134777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 17387521 - 17387577
Alignment:
| Q |
323 |
acttggtgaatgcatgaacctagaaagcaaactagcagagaacatcaaatctggtct |
379 |
Q |
| |
|
|||||| || ||||| ||||| ||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
17387521 |
acttggagattgcataaaccttgaaagcaaacttgtagaaaacatcaaatctggtct |
17387577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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