View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8502_low_4 (Length: 416)
Name: NF8502_low_4
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8502_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 50 - 381
Target Start/End: Original strand, 14812660 - 14812993
Alignment:
| Q |
50 |
aagcaccttcctccacatacataactgctaaaaactttaattaaagacttctatgctccaaatgcatcctccaacatcattaacctaatagagccaaatt |
149 |
Q |
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| T |
14812660 |
aagcaccttcctccacatacataactactaaaaactttaattaaagatttctatgttccaaatgcatcctccaacatcatttaccaaatagagctaaatt |
14812759 |
T |
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| Q |
150 |
aaactccactaatctctaaaccccgaa-catcctttctccttatccaaacaaataatgtcccattgaatctactaaattttcttaacatcgtcacattag |
248 |
Q |
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| T |
14812760 |
aaactccactaacctctaaacccccaaacatcctttctccttatccaaacaaataatgtcccattgaatctattaaattttcttaacatcgtcacattag |
14812859 |
T |
|
| Q |
249 |
tgaaggttgattcacctgacaaggatttgattcatattctaaaagagcgtgtgtttaactctt-gctatcaatgtatgaatctttattgtagacaatccg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||| | ||| |
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| T |
14812860 |
tgaaggttgattcacctgacaaggatttgattcatattctgaaagagcttgtgtttaactcttagttatcaatgtatgaatctttattgtaggcgatcaa |
14812959 |
T |
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| Q |
348 |
tgagtacctctattaacatttggttaaccttgac |
381 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14812960 |
tgagtacctctattaacatttggttaaccttgac |
14812993 |
T |
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