View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8502_low_5 (Length: 371)
Name: NF8502_low_5
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8502_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 39073405 - 39073760
Alignment:
| Q |
1 |
aagattgcagctatgcaaccggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcag |
100 |
Q |
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| T |
39073405 |
aagattgcagctatgcaaccggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcag |
39073504 |
T |
|
| Q |
101 |
ctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagc |
200 |
Q |
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| T |
39073505 |
ctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagc |
39073604 |
T |
|
| Q |
201 |
cattcgttatgttaagtttttgaagagacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaa |
300 |
Q |
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| T |
39073605 |
cattcgttatgttaagtttttgaagagacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaa |
39073704 |
T |
|
| Q |
301 |
tgcattaattctacaactcctagtgctttgttattgtccccttcttccggttgtga |
356 |
Q |
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| T |
39073705 |
tgcattaattctacaactcctagtgctttgttattgtccccttcttccggttgtga |
39073760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 6259580 - 6259729
Alignment:
| Q |
82 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacag |
181 |
Q |
| |
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| T |
6259580 |
gatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattacaaagattagtacctggtggaacaaaaatggacactg |
6259679 |
T |
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| Q |
182 |
cttctatgcttgatgaagccattcgttatgttaagtttttgaagagacaa |
231 |
Q |
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| T |
6259680 |
cttctatgttagatgaagcaatacattatgtgaagtttttgaagaaacaa |
6259729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 46899304 - 46899443
Alignment:
| Q |
80 |
aagatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatac |
179 |
Q |
| |
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||||||| || ||| | ||||||||||| |||||||||||||| || ||||| || | || || |||||| | || || |||||||||||||||||||| |
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| T |
46899304 |
aagatcctcagagtatagcagctagacacagaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatac |
46899403 |
T |
|
| Q |
180 |
agcttctatgcttgatgaagccattcgttatgttaagttt |
219 |
Q |
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| T |
46899404 |
tgcatcaatgttggatgaagctattcattatgttaagttt |
46899443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 25645321 - 25645275
Alignment:
| Q |
82 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtga |
128 |
Q |
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| T |
25645321 |
gatccacaaagtgttgcagctagagaaagaagacatagaatcagtga |
25645275 |
T |
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