View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8502_low_7 (Length: 327)
Name: NF8502_low_7
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8502_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 36578841 - 36579059
Alignment:
| Q |
16 |
catcaaggactcaacaatctctttttgatcaaaatttatcatgtgaaagctcttaacataatacgagaaaaattatgaagagaatgtgtactcatgttcg |
115 |
Q |
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| T |
36578841 |
catcaaggactcaacaatctctttttgatcaaaatttatcatgtgaaagctcttaacataatacgagaaaa-ttatgaagagaatgtgtactcatgttcg |
36578939 |
T |
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| Q |
116 |
acaacataattgaagaaactattattccaaaggaacagaagaaagatgaattatgttggtctcagtcagactcaggtcaattatccctcaggcaggccta |
215 |
Q |
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| T |
36578940 |
acaacataattgaagaaactattattccaaaggaacagaagaaagatgaattatgttggtctcagtcagactcaggtcaattatccctcaggcaggccta |
36579039 |
T |
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| Q |
216 |
tgctcatgttattcctccaa |
235 |
Q |
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| T |
36579040 |
tgctcatcttattcctccaa |
36579059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 36579078 - 36579119
Alignment:
| Q |
233 |
caaagcttgtatggaacatcagtagtattcctccttcatgca |
274 |
Q |
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| T |
36579078 |
caaagcttgtatggaacatcagtagtattcctccttcatgca |
36579119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 51804383 - 51804474
Alignment:
| Q |
23 |
gactcaacaatctctttttgatcaaaatttatcatgtgaaagctcttaacataatacgagaaaaattatgaagagaatgtgtactcatgttc |
114 |
Q |
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| T |
51804383 |
gactcaacaatctctctttgatcaaaactaatcatgtgaaaactcttaacatcataagagaaaaatgatgaagagagtgtgtattcgtgttc |
51804474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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