View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8502_low_8 (Length: 323)

Name: NF8502_low_8
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8502_low_8
NF8502_low_8
[»] chr6 (1 HSPs)
chr6 (10-307)||(1446843-1447137)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 1447137 - 1446843
Alignment:
Q  10 gcagagatgaaaataagggagccctaaactttcctataaaaatgatcaaaccaaataannnnnnngaattaagacctaaactttccaacttaattgcaca 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |    
T  1447137 gcagagatgaaaataagggagcc-taaactttcctataaaaatgatcaaaccaaataatttttttgaattaagacctaaactttccaacttaattgcata 1447039  T
Q  110 aagatttccttctataaaaatatgattgacaatgaagctcattgataaagtaagacgtatgctactaagccattaacaagggtatttgttcctagtgttc 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1447038 aagatttccttctataaaaatatgattaacaatgaagctcattgataaagtaagacgtatgctactaagccattaacaagggtatttgttcctagtgttc 1446939  T
Q  210 ttgctatgattaacaggtattttcttaggtaatatgctatgagaacttcataatatatgcttagcctttgggttttgttaacaaatcaacgtgatttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1446938 ttgctatgattaacaggtattttcttaggtaatatgctatgagaacttcata--atatgcttagcctttgggttttgttaacaaatcaacgtgatttc 1446843  T

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