View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8502_low_9 (Length: 295)
Name: NF8502_low_9
Description: NF8502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8502_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 24992814 - 24993084
Alignment:
| Q |
1 |
attttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcagaagctctatattcaattaatcagaagctcaagcggagat |
100 |
Q |
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| T |
24992814 |
attttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcagaagctctatattcaattaatcagaagctcaagcggagat |
24992913 |
T |
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| Q |
101 |
catagcccgaaaactttgaatgacttagagaaaagacagttgaattgaagaggtcacctctgatctgattttcagtttctctatattcaattaatttcga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24992914 |
catagcccgaaaactttgaatgacttagagaaaagacag-----ttgaagaggtcacctctgatctgattttcagtttctctatattcaattaatttcga |
24993008 |
T |
|
| Q |
201 |
acttttaaaattatcatgtcattagtgttcagattattattcaaaccttatttcttattaatttttggcttgtgat |
276 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
24993009 |
acttttaaaattatcatgccattagtgttcagattattatgcaaaccttatttcttattaattttttgcttgtgat |
24993084 |
T |
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