View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_high_11 (Length: 405)
Name: NF8503_high_11
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 4 - 391
Target Start/End: Original strand, 34335811 - 34336199
Alignment:
| Q |
4 |
atctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335811 |
atctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaa |
34335910 |
T |
|
| Q |
104 |
tgctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaagga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34335911 |
tgctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaagga |
34336010 |
T |
|
| Q |
204 |
ttacatgccgggaagagtcttcttgatcaagcatcgcagaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctac- |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34336011 |
ttacatgccgggaagagtcttcttgatcaagcatcgcaaaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctaca |
34336110 |
T |
|
| Q |
303 |
nnnnnnnttatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34336111 |
aaaaaaattatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
34336199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University