View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8503_high_18 (Length: 341)

Name: NF8503_high_18
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8503_high_18
NF8503_high_18
[»] chr6 (3 HSPs)
chr6 (10-325)||(35035150-35035469)
chr6 (88-325)||(34974426-34974660)
chr6 (167-325)||(34955964-34956119)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 35035469 - 35035150
Alignment:
Q  10 attattctttaaatacacac----tcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcc 105  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35035469 attattctttaaatacacacacactcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcc 35035370  T
Q  106 tttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcctaagagcaaatccatt 205  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||        ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  35035369 tttgtaacacttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcctaagagcaaatccatt 35035270  T
Q  206 atgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35035269 atgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagat 35035170  T
Q  306 ttgttcttcacatccgtttc 325  Q
    ||||||||||||||||||||    
T  35035169 ttgttcttcacatccgtttc 35035150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 34974660 - 34974426
Alignment:
Q  88 tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct 187  Q
    |||||||||| |||| |||||||| ||| |||  ||||| | |||| |||| ||||||||||        |||||||  |||||||||||||||||||||    
T  34974660 tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct 34974561  T
Q  188 cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca 287  Q
    |||||||||||| |||||||| ||||||||| |||||||||  ||| ||||   ||| || |||||||||||||||| |||||| ||||||  | |||      
T  34974560 cctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa-- 34974463  T
Q  288 tcacctaaaaacttagatttgttcttcacatccgtttc 325  Q
     |||||||||| ||||||||||||||||||||| ||||    
T  34974462 -cacctaaaaatttagatttgttcttcacatccatttc 34974426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 325
Target Start/End: Complemental strand, 34956119 - 34955964
Alignment:
Q  167 atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct 266  Q
    |||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || |||||   ||| || ||||||||||||||||||    
T  34956119 atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct 34956020  T
Q  267 ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttc 325  Q
    ||||| || |||  |||||   |||  ||||| ||||||||||||||||||||||||||    
T  34956019 ctaaaacccttaggtcaaa---cacaaaaaaatttagatttgttcttcacatccgtttc 34955964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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