View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_high_2 (Length: 619)
Name: NF8503_high_2
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 5 - 591
Target Start/End: Original strand, 50214358 - 50214944
Alignment:
| Q |
5 |
caatgagatggacatcaagtctagtaacaatttacataagggctagttctatatgctttgctacacatcgtatatcaatttcagagcattcaatttcaat |
104 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50214358 |
caattagatagacagcaagtctagtaacaatttacataagggctagttcaatatgctttgctacacatcgtatatcaatttcagagcattcaatttcaat |
50214457 |
T |
|
| Q |
105 |
tctctcttctaaaactccattgttgcaacaagtattatatcagagatatatattattcatggtcacttaatataacaaacccgcacttcaattttacctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50214458 |
tctctcttctaaaactccattgttgcaacaagtattatatcagagatatatattattcatggtcacttaatataacaaacccgcacttcaattttacctt |
50214557 |
T |
|
| Q |
205 |
tatttctgcactaggtccaagccattgtccccgaagaccatttggtcctaaaaacacgtgtcttgccaagctctccttatttggtaggggtacattcaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
50214558 |
tatttctgcactaggtccaagccattgtccccgaagaccatttggtcctaaaaatgagtgtcttgacaaggtctccttatttggtaggggtacattcaga |
50214657 |
T |
|
| Q |
305 |
gatctgcaagtccagagaacagttatcatatttcctccttcaacacagcagcatgatttttcttttgaaatatatcaccaatgttcaagacagaacctcc |
404 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50214658 |
gatctgcaagtccagagaaaaattatcatatttcctccttcaacacagcagcatgatttttcttttgaaatatatcaccgatgttcaagacagaacctcc |
50214757 |
T |
|
| Q |
405 |
tcaaatcacacggataataggaacatatatgctaattaaattgggctgaatgaaaatggcattaggagtggaaatagtatataagcaacnnnnnnngtat |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50214758 |
tcaaatcacacggataataggaacatatatgctaattaaattgggctgaatgaaaatggcattaggagtggaaatagtatataagcaacaaaaaaagtat |
50214857 |
T |
|
| Q |
505 |
aagtataacattagaattagatccagtaaggtgtacatgtagtaaatgcaagaaatctgttaaatgaaacacttctattatttactc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50214858 |
aagtataacattagaattagatccagtaaggtgtacatgtagtaaatgcaagaaatctgttaaatgaaacacttctattctttactc |
50214944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University