View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_high_31 (Length: 246)
Name: NF8503_high_31
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4373942 - 4374051
Alignment:
| Q |
1 |
ttggatagaataagttttagaaattataggatatgacacatcatcagcacaatatatagtgtaagtttagtataaaaacacaaaaatgtaactaaaagag |
100 |
Q |
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| T |
4373942 |
ttggatagaataagttttagaaattataggatatgacacatcatcagcacaatatatagtgtaagtttagtataaagacacaaaaatgtaactaaaagag |
4374041 |
T |
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| Q |
101 |
taacagaaga |
110 |
Q |
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| T |
4374042 |
taacagaaga |
4374051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 4374089 - 4374178
Alignment:
| Q |
145 |
tatcggtttcttctgtataaaatactagagtatgtcaacagagatcagctttaatgaactgataatttttgtgaatattggtcttgatgt |
234 |
Q |
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| T |
4374089 |
tatcggtttcttctgtataaaatactagagtatgtcaacagagatcagctttaatgaactgataatttttgtgaatattggtcttgatgt |
4374178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 4382241 - 4382348
Alignment:
| Q |
3 |
ggatagaataagttttagaaattataggatatgacacatcatcagcacaatatatagtgtaagtttagtataaaaacacaaaaatgtaactaaaagagta |
102 |
Q |
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| T |
4382241 |
ggattgaataagttttagaaactatagaatatgacacatcattgacacaatgtatagtgtaaatttagtataaaaacacaataatgtaactaaaagatta |
4382340 |
T |
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| Q |
103 |
acagaaga |
110 |
Q |
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| T |
4382341 |
acagaaga |
4382348 |
T |
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