View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_high_32 (Length: 243)
Name: NF8503_high_32
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 35009379 - 35009594
Alignment:
| Q |
19 |
aaaagggtaccctatttcatcctttaatctttattatcatgaagcaaagcaccttgctttaaaaagaaaattggaatttggaagtgggannnnnnnctat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35009379 |
aaaagggtaccctatttcatcctttaatctttattatcatgaagcaaagcaccttgctttaaaaagaaaattggaatttggaagtgggatttttttctat |
35009478 |
T |
|
| Q |
119 |
gataggatctattatggtttaagcttaagtgatgcaattgggttcaaagggtgtagagaaattgaagggccttatgttgattacttggaacaagagtttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35009479 |
gataggatctattatggtttaagcttaagtgatgcaattgggttcaaaggtattagagaaattgaagggccttatgttgattacttggaacaagagtttg |
35009578 |
T |
|
| Q |
219 |
gtaaacctgttcttct |
234 |
Q |
| |
|
|||||||||||||||| |
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| T |
35009579 |
gtaaacctgttcttct |
35009594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 36288928 - 36289143
Alignment:
| Q |
19 |
aaaagggtaccctatttcatcctttaatctttattatcatgaagcaaagcaccttgctttaaaaagaaaattggaatttggaagtgggannnnnnnctat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || |||||||||||||| ||| |
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| T |
36288928 |
aaaagggtaccctatttcatcctttaatctttattctcatgaagcaaagttccttgctttaaaaagaaattttgaatttggaagtggagttattttttat |
36289027 |
T |
|
| Q |
119 |
gataggatctattatggtttaagcttaagtgatgcaattgggttcaaagggtgtagagaaattgaagggccttatgttgattacttggaacaagagtttg |
218 |
Q |
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|||||| | | | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
36289028 |
gataggctttttattggtttgagcttaagtgatgcaatttggttcaaagggtgtagagaaattgaagggtcttatgttgattacttagaacaagagtttg |
36289127 |
T |
|
| Q |
219 |
gtaaacctgttcttct |
234 |
Q |
| |
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|||| ||||||||||| |
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| T |
36289128 |
gtaagcctgttcttct |
36289143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 35036554 - 35036339
Alignment:
| Q |
19 |
aaaagggtaccctatttcatcctttaatctttattatcatgaagcaaagcaccttgctttaaaaagaaaattggaatttggaagtgggannnnnnnctat |
118 |
Q |
| |
|
|||||||||||||| |||||| || | |||||||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||| ||| |
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| T |
35036554 |
aaaagggtaccctaattcatcattcactctttattctcatgaagcaaagtatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttat |
35036455 |
T |
|
| Q |
119 |
gataggatctattatggtttaagcttaagtgatgcaattgggttcaaagggtgtagagaaattgaagggccttatgttgattacttggaacaagagtttg |
218 |
Q |
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|||||| | | | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
35036454 |
gataggctttttaatggtttgagcttaagtgatgcaattgggttcaaagggtgtagacaaattgaagggccttatgttgattacttagaacaagaatttg |
35036355 |
T |
|
| Q |
219 |
gtaaacctgttcttct |
234 |
Q |
| |
|
|||| ||||||||||| |
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| T |
35036354 |
gtaagcctgttcttct |
35036339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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