View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_high_38 (Length: 220)
Name: NF8503_high_38
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 20691640 - 20691436
Alignment:
| Q |
1 |
aactgttccatcttcgtctctgcctacgacgacagaattgctgagttctgaacttgaaaagaagcttacactggagacggttccggaggcttctgctccg |
100 |
Q |
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| T |
20691640 |
aactgttccatcttcgtctctgcctccgacgacagcattgctgagttctgaacttgaaaagaagcttacactggagacggttccggaggcttctgctccg |
20691541 |
T |
|
| Q |
101 |
tcgtctcagaaggcgacaaggttccctgaccgtcctggtttcggtcaagtaggaaggaagattcgagttcgcgccaatcatttccatgtgcaagtcgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20691540 |
tcgtctcagaaggcgacaaggttccctgaccgtcctggtttcggtcaagtaggaaggaagattcgagttcgcgccaatcatttccatgtgcaagtcgcta |
20691441 |
T |
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| Q |
201 |
ctaat |
205 |
Q |
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||||| |
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| T |
20691440 |
ctaat |
20691436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 20666910 - 20666803
Alignment:
| Q |
88 |
ggcttctgctccgtcgtctcagaaggcgacaaggttccctgaccgtcctggtttcggtcaagtaggaaggaagattcgagttcgcgccaatcatttccat |
187 |
Q |
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|||||| || |||||||||||||||||| ||||| ||| || | |||||| |||||| | |||||||||| |||| |||||| || ||||||||||| |
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| T |
20666910 |
ggcttcagcgccgtcgtctcagaaggcggtgaggtttcctaacagacctggtatcggtcgattaggaaggaaaattcaagttcgtgctaatcatttccag |
20666811 |
T |
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| Q |
188 |
gtgcaagt |
195 |
Q |
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| T |
20666810 |
ctgcaagt |
20666803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 44507844 - 44507986
Alignment:
| Q |
61 |
gaagcttacactggagacggttccggaggcttctgctccgtcgtctcagaag---gcgacaaggttccctgaccgtcctggtttcggtcaagtaggaagg |
157 |
Q |
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| T |
44507844 |
gaagcttacgccggagatggttcccgaggcttctgctccatcgtctcagaagaaggtgataaggttccctgaccgacctggtttcggtcaagaaggaagg |
44507943 |
T |
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| Q |
158 |
aagattcgagttcgcgccaatcatttccatgtgcaagtcgcta |
200 |
Q |
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| T |
44507944 |
aagattccagttcaggcaaatcatttccagttgcaagtcgcta |
44507986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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