View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_high_39 (Length: 219)
Name: NF8503_high_39
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5344852 - 5344657
Alignment:
| Q |
1 |
aaggaaaactccgatttgtcggagatgatattgtgattttgcgccaccatgccctcctccagcactcactatggctgcaggtttaccagcccaaacattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5344852 |
aaggaaaactccgatttgtcggagatgatattgtgattttgcaccaccatgccctcctccagcactcactatggccgcaggtttaccagcccaaacattt |
5344753 |
T |
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| Q |
101 |
ggtgatcttgatgcccagtcaagtgcattctttagtggagctgnnnnnnnntgcataaaacaatagattagaaaaagataagcttatatgtttggat |
197 |
Q |
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| T |
5344752 |
ggtgatcttgatgcccagtcaagtgcattctttagtggagctg-aagaaaatgcataaaacaatagattagaaaaagataagcttatatgtttggat |
5344657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 5351867 - 5351728
Alignment:
| Q |
4 |
gaaaactccgatttgtcggagatgatattgtgattttgcgccaccatgccctcctccagcactcactatggctgcaggtttaccagcccaaacatttggt |
103 |
Q |
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||||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||| ||||||||||||| |||| || |||||||||||||||||| |
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| T |
5351867 |
gaaaactccaatttgtcggagatgatagtgtgactttgcaccgccgtgtcctcctccaacactcactatggcagcagactttccagcccaaacatttggt |
5351768 |
T |
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| Q |
104 |
gatcttgatgcccagtcaagtgcattctttagtggagctg |
143 |
Q |
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| T |
5351767 |
ggtcttgatgcccaatcaattgcattctttagtggagctg |
5351728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 5338261 - 5338402
Alignment:
| Q |
1 |
aaggaaaactccgatttgtcggagatgatattgtgattttgcgccaccatgccctcctccagcactcactatggctgcaggtttaccagcccaaacattt |
100 |
Q |
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||||||||| |||||||| |||||||||| ||| | |||| | |||||| |||||||| ||||||||||||| |||| |||||||||||| |||||| |
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| T |
5338261 |
aaggaaaaccccgatttggcggagatgatgttgagcttttcctccaccaaaggctcctccaacactcactatggcagcagttttaccagcccatacattt |
5338360 |
T |
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| Q |
101 |
ggtgatcttgatgcccagtcaagtgcattctttagtggagct |
142 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
5338361 |
ggtggtcttgatccccaatcaagtgcattctttagtggagct |
5338402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 5325241 - 5325375
Alignment:
| Q |
1 |
aaggaaaactccgatttgtcggagatgatattgtgattttgcgccaccatgccctcctccagcactcactatggctgcaggtttaccagcccaaacattt |
100 |
Q |
| |
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||||||||| |||||||| |||||||||| |||| |||| | |||||| |||||||| ||||||| ||||| ||||| || ||||||||||||||| |
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| T |
5325241 |
aaggaaaaccccgatttggcggagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaatggcagcaggctttccagcccaaacattt |
5325340 |
T |
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| Q |
101 |
ggtgatcttgatgcccagtcaagtgcattctttag |
135 |
Q |
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|||| |||||||||||| |||| |||||||||||| |
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| T |
5325341 |
ggtggtcttgatgcccaatcaattgcattctttag |
5325375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 14535529 - 14535585
Alignment:
| Q |
86 |
ccagcccaaacatttggtgatcttgatgcccagtcaagtgcattctttagtggagct |
142 |
Q |
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||||||||||||||||||| ||| |||||||| |||| ||||||||| | ||||||| |
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| T |
14535529 |
ccagcccaaacatttggtggtctagatgcccaatcaattgcattcttcaatggagct |
14535585 |
T |
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