View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_high_6 (Length: 455)
Name: NF8503_high_6
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_6 |
 | |
|
| [»] scaffold0206 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 3478343 - 3478766
Alignment:
| Q |
18 |
tcaaatgcaccttttcaacccaacaaaccttaatataaaaggtgaaactttgcttgatccaaagcaattattccacatcacaacatagtaagagccattc |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3478343 |
tcaaatgcactttttcaacccaacaaaccttaatataaaaggtgaaactttgcttgctccaaagcaattattccacatcacaatatagtaagagccattc |
3478442 |
T |
|
| Q |
118 |
ttgaaaataaaattcccctgtgatcagactgtatcagttaacaagtcttaagcattaccaatgcatgcattgccaatgaatccatcacataaggctttca |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
3478443 |
ttgaaaatcaaattcccctgtgatcagactgtatcagttaacaagtcttgagcattaccaatgcatgcattgccaatgaacccatcacataaggcttgta |
3478542 |
T |
|
| Q |
218 |
atccactgaatttcgctctgatcgccaactacctctacttcagctttagaaggttcatatttgttcagaagttttggacattggaaattgcatagactca |
317 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3478543 |
atccaccaaatttccctctgatcgccaactacatctacttcaactttagaaggttcatatttgttcagaagttttggacattggaaattgcatagactca |
3478642 |
T |
|
| Q |
318 |
agagcctta-tccttctcctaataacaaactatttttgtattatgccctttttcctacacttcaaagttcaaacgaacctaaatctgctcagtgcatgac |
416 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3478643 |
agagccttactccttctcctaatagcacactatttttgtattatgccctttttcctgcacttcaaagttcaaactaacctaaatctgctcagtgcatgac |
3478742 |
T |
|
| Q |
417 |
agaaaaaacatgtccacaaattat |
440 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3478743 |
agaaaaaacatgtccacaaattat |
3478766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 3538094 - 3537969
Alignment:
| Q |
97 |
acaacatagtaagagccattcttgaaaataaaattcccctgtgatcagactgtatcagt--taacaagtcttaagcattaccaatgcatgcattgccaat |
194 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
3538094 |
acaacacagtaagagccattcttgaaaatcaaattcccctatgatcagaatgtatcagtacacacaagtcttaagaattacaaat--atgcattgccaat |
3537997 |
T |
|
| Q |
195 |
gaatccatcacataaggctttcaatccac |
223 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
3537996 |
gaa-ccatcacataaggctttcaatccac |
3537969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 3537766 - 3537722
Alignment:
| Q |
394 |
cctaaatctgctcagtgcatgacagaaaaaacatgtccacaaatt |
438 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
3537766 |
cctaaatctgcacagtgcatgacagaaaaaacatgtccaccaatt |
3537722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 261 - 440
Target Start/End: Original strand, 29331 - 29511
Alignment:
| Q |
261 |
ctttagaaggttcatatttgttcagaagttttggacattggaaattgcatagactcaagagcctta-tccttctcctaataacaaactatttttgtatta |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
29331 |
ctttagaaggttcatatttgttcagaagttttggacattggaaattgcatagactcaagagccttactccttctcctaatagcacactatttttgtatta |
29430 |
T |
|
| Q |
360 |
tgccctttttcctacacttcaaagttcaaacgaacctaaatctgctcagtgcatgacagaaaaaacatgtccacaaattat |
440 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29431 |
tgccctttttcctgcacttcaaagttcaaacgaacctaaatctgctcagtgcatgacagaaaaaacatgtccacaaattat |
29511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 287
Target Start/End: Complemental strand, 15079627 - 15079480
Alignment:
| Q |
139 |
gatcagactgtatcagttaacaagtcttaagcattaccaatgcatgcattgccaatgaatccatcacataaggctttcaatccactgaatttcgctctga |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||| | ||||||||||||||||| ||||| |||| | | ||| |
|
|
| T |
15079627 |
gatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaa-ctatcacataaggctttcattccaccaaattcccatgtga |
15079529 |
T |
|
| Q |
239 |
tcgccaactacctctacttcagctttagaaggttcatatttgttcagaa |
287 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
15079528 |
tcgctaaccacctctacttcagctttagaaggttcatttatgttcagaa |
15079480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 287
Target Start/End: Original strand, 15161980 - 15162188
Alignment:
| Q |
75 |
tccaaagcaattattccacatcacaacatagtaagagccattcttgaaaataaaattcccctgtgatcaga-----ctgtatcagttaacaagtcttaag |
169 |
Q |
| |
|
||||||||||||| |||||||||| | ||||| | || ||||||||| ||| ||| ||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
15161980 |
tccaaagcaattactccacatcaccatatagtgaaaggcattcttgataatcaaactcccctgtgatcagatcagactgtatcagttcacaagttttaag |
15162079 |
T |
|
| Q |
170 |
cattaccaatgcatgcattgccaatgaatccatcacataaggctttcaatccactgaatttcgctctgatcgccaactacctctacttcagctttagaag |
269 |
Q |
| |
|
|| ||||||||||||||||| | ||||||||||||||||| ||||| |||| | | ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15162080 |
--------atccatgcattgccaatgaa-ctatcacataaggctttcagtccaccaaattcccatgtgatcgctaaccacctctacttcagctttagaag |
15162170 |
T |
|
| Q |
270 |
gttcatatttgttcagaa |
287 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
15162171 |
gttcatttatgttcagaa |
15162188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 15166621 - 15166765
Alignment:
| Q |
139 |
gatcagactgtatcagttaacaagtcttaagcattaccaatgcatgcattgccaatgaatccatcacataaggctttcaatccactgaatttcgctctga |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||| | ||||||||||||||||| ||||| |||| | | ||| |
|
|
| T |
15166621 |
gatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaa-ctatcacataaggctttcattccaccaaattcccatgtga |
15166719 |
T |
|
| Q |
239 |
tcgccaactacctctacttcagctttagaaggttcatatttgttcagaa |
287 |
Q |
| |
|
| || ||| ||||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
15166720 |
ttgctaaccacctcta---cagctttagaaggttcatttatgttcagaa |
15166765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University