View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_high_9 (Length: 411)
Name: NF8503_high_9
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 34335831 - 34335458
Alignment:
| Q |
18 |
catcacgaccaagttctagattgtatacacgcttccctgcagcatattctcccataagttggtaggatctttctgattgatccattgcaacacaaatatc |
117 |
Q |
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| T |
34335831 |
catcacgaccaagttctagatcgtatacacgcttccctgcagcatattctcccataagttggtaggatctttctgattgatccattgcaacacaaatatc |
34335732 |
T |
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| Q |
118 |
atcactacctgctcaaattcaagttnnnnnnnntgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgattcggattaag |
217 |
Q |
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| T |
34335731 |
atcactacctgctcaaattcaagttaaaaaaaatgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgattcggattaag |
34335632 |
T |
|
| Q |
218 |
atacaacttgcatgtatcatgtgatacctaacatttcaagaatgaaattactcacatgcagctaactctatttgtgtctggtagataaattccaaaactg |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34335631 |
atacaacttgcatgtatcatgtgatacctaacatt-caagaatggaattactcacatgcagctaactctatttgcgtctggtagataaattccaaaactg |
34335533 |
T |
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| Q |
318 |
ctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctccc |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335532 |
ctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctccc |
34335458 |
T |
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