View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_10 (Length: 550)
Name: NF8503_low_10
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_10 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 5 - 541
Target Start/End: Complemental strand, 24896452 - 24895917
Alignment:
| Q |
5 |
aattcattttctctcctgtaaatctttccaatgttagagcggaatcaaatttcattgaggagacaatttgagttccgtccgtgnnnnnnnnnnnnnnnnn |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24896452 |
aattcattttctctcctgtaaatctttccaatgttagagcggaatcaaaattcattgaggagacaatttgagttccgtccgtgttttttttctttttctt |
24896353 |
T |
|
| Q |
105 |
nggtgtatcgatagatgaagttacaatagtcatcggaaactcacacacataagcggaggagtcagagttcgaacgccggtcacggtgtacgacttgataa |
204 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24896352 |
ttgtgtatcgatagacgaagttacaatagtcatcggaaactcacacacataagcggaggagtcagagttcgaacgccggtcacagtgtacgacttgataa |
24896253 |
T |
|
| Q |
205 |
tttcggtatttttgtcggatgagataagacttgtggatccggccctctatttgtcccaactaaacactaaacaagtaagttataaaataaggcgtgcagg |
304 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24896252 |
tttcggtatttttgttggatgagataagacttgtggatccggccctctatttgtcccaactaaacactaaacaagtaagttataaaataaggcgtgcagg |
24896153 |
T |
|
| Q |
305 |
aattagataaaaacaatttggaagggaaattaccacttgaaataacttgagcagaatttccatgtgaattttttatctgcaaatccagcttgcacgaact |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24896152 |
aattagataaaaacaatttggaagggaaattaccacttgaaataacttgagcagaatttccatgtgaattttttat-tgcaaatccagcttgcacgaact |
24896054 |
T |
|
| Q |
405 |
catgtggttgttgaactctttgactgcgatttccattgctatcttctgatgctttcccattaatgaaaccaaatcaagcacagcacctatgctcataaca |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24896053 |
catgtggttgttgaactctttgactgcgatttccattgctatcttctgatgctttcccattaatgaaaccaaatcaagcacagcacctatgctcataaca |
24895954 |
T |
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| Q |
505 |
gacctttgtgtcactaagcagtggcttcatctcactc |
541 |
Q |
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| T |
24895953 |
gacctttgtgtcactaagcagtggcttcttttcactc |
24895917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 322 - 541
Target Start/End: Complemental strand, 24908368 - 24908146
Alignment:
| Q |
322 |
ttggaagggaaattaccacttgaaataacttgagcagaatttccatgtgaattttttatctgcaaatccagcttgcacgaactcatgtggttgttgaact |
421 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
24908368 |
ttggaagggaaattaccacttgaaataacttgtgcagaattgccatgtgaatcttttatctgcaaatccagcttggacgaactcaattggttgttgaact |
24908269 |
T |
|
| Q |
422 |
ctttgactgcgatttccattgctatcttctgatgctttcccattaatgaaaccaaatcaagcacagcacctatgctcataacagacctttgt---gtcac |
518 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||| |
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| T |
24908268 |
ctttgactgcaatttccattgctatcttttgatgttttcccattaatgaaaccaaatcaagcacaacacctatgctcataacagacttttgtttcggcac |
24908169 |
T |
|
| Q |
519 |
taagcagtggcttcatctcactc |
541 |
Q |
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|||||||||||||| | |||||| |
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| T |
24908168 |
taagcagtggcttcttttcactc |
24908146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 322 - 541
Target Start/End: Complemental strand, 24985903 - 24985681
Alignment:
| Q |
322 |
ttggaagggaaattaccacttgaaataacttgagcagaatttccatgtgaattttttatctgcaaatccagcttgcacgaactcatgtggttgttgaact |
421 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
24985903 |
ttggaagggaaattaccacttgaaataacttgtgcagaattgccatgtgaatcttttatctgcaaatccagcttggacgaactcaattggttgttgaact |
24985804 |
T |
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| Q |
422 |
ctttgactgcgatttccattgctatcttctgatgctttcccattaatgaaaccaaatcaagcacagcacctatgctcataacagacct---ttgtgtcac |
518 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||| |
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| T |
24985803 |
ctttgactgcaatttccattgctatcttttgatgttttcccattaatgaaaccaaatcaagcacaacacctatgctcataacagacttttgttgtggcac |
24985704 |
T |
|
| Q |
519 |
taagcagtggcttcatctcactc |
541 |
Q |
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|||||||||||||| | |||||| |
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| T |
24985703 |
taagcagtggcttcttttcactc |
24985681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 494
Target Start/End: Complemental strand, 137849 - 137686
Alignment:
| Q |
331 |
aaattaccacttgaaataacttgagcagaatttccatgtgaattttttatctgcaaatccagcttgcacgaactcatgtggttgttgaactctttgactg |
430 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||| |||||||||||||||| |||| |
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| T |
137849 |
aaattaccacttgcaattacttgagcagaatttccatgtgaatcttttatctgcaaattcagcttggaagaactagattggttgttgaactcttccactg |
137750 |
T |
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| Q |
431 |
cgatttccattgctatcttctgatgctttcccattaatgaaaccaaatcaagcacagcacctat |
494 |
Q |
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| T |
137749 |
caatttccattgctatcttctggtgttttcccattaatgaaaccaaatcaagaacagcacctat |
137686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 335 - 497
Target Start/End: Complemental strand, 146308 - 146143
Alignment:
| Q |
335 |
taccacttgaaataacttgagcagaatttccatgtgaattttttatctgcaaatccagcttgcacgaa---ctcatgtggttgttgaactctttgactgc |
431 |
Q |
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||||| ||| ||| ||||||||||||| |||||| || | ||||||||||||||||||||| | ||| ||| | ||||| |||||||| | ||||| |
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| T |
146308 |
taccatttgcaattacttgagcagaatctccatgagagtcttttatctgcaaatccagcttagaagaagaactcgtttggttattgaactcatgcactgc |
146209 |
T |
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| Q |
432 |
gatttccattgctatcttctgatgctttcccattaatgaaaccaaatcaagcacagcacctatgct |
497 |
Q |
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||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
146208 |
aatttctattgctatcttctggtgctttcccattaatgaacccaaatcaagcacagcacctatgct |
146143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 328 - 499
Target Start/End: Complemental strand, 21948 - 21766
Alignment:
| Q |
328 |
gggaaattaccacttgaaataacttgagc-agaatttccatgtgaattttttatctgc-aaatccagcttgcacgaactc-atgtggttgttgaac-tct |
423 |
Q |
| |
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|||||||||||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||| ||| |||| || |||||||||||| ||| |
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| T |
21948 |
gggaaattaccacttgaaataacttgtgcgagaattgccatgtgaatcttttatctgcgaaatccagcttggacg-actcaatttggttgttgaacttct |
21850 |
T |
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| Q |
424 |
ttg-actgcgatttccattgc-tatcttct--gatgcttt---cccattaatgaaacc-aaatcaagcacagcacctatgctca |
499 |
Q |
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||| ||||| ||||||||||| |||||| | ||| ||| || |||||||||||| |||||||||||| |||||||||||| |
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| T |
21849 |
ttgaactgcaatttccattgcttatcttttagtatgtttttcccctattaatgaaaccaaaatcaagcacaacacctatgctca |
21766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 31507909 - 31507831
Alignment:
| Q |
114 |
gatagatgaagttacaatagtcatcggaaactcacacacataagcggaggagtcagagttcgaacgccggtcacggtgt |
192 |
Q |
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|||||||||| | ||||||||||| ||||| ||| ||||| ||| |||| |||||| |||| | | ||||||||||||| |
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| T |
31507909 |
gatagatgaaatgacaatagtcattggaaattcagacacacaagtggagaagtcagggttcaagccccggtcacggtgt |
31507831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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