View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_11 (Length: 545)
Name: NF8503_low_11
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 29609933 - 29610450
Alignment:
| Q |
1 |
aggttgtaccatttcaccatttagccatcagatctgttgaaacagctactgaaaacaagcatcacagtgaatatagcaagaactaagtcagatacatgga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29609933 |
aggttgtaccatttcaccatttagacatcagatctgttgaaacagctactgaaaacaagcatcacagtgaatatagcaagaactaagtcagatacatgga |
29610032 |
T |
|
| Q |
101 |
ttccgtgtataggaatcccactgaaacggttgaagatcgcatcaaaaaccttctttctcttatgacattgaaagagaagattggtcagatgacccaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29610033 |
ttccgtgtataggaatcccactgaaacggttgaagatcgcatcaaaaaccttctttctcttatgacattgaaagagaagattggtcagatgacccaaatt |
29610132 |
T |
|
| Q |
201 |
gaacgttctgttactactccttctgccattaaagatttcaccattggtacactattactataaacatttgtgcttccttttactactttcatttcttggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29610133 |
gaacgttctgttactactccttctgccattaaagatttcaccattggtacactattactatcaacatttgtgcttccttttactactttcatttcttggt |
29610232 |
T |
|
| Q |
301 |
aatagtaacttgtctctcannnnnnnctgcttgtattttttaaccaagggagtgtatactgtgctccaccaaatagtgcaactgctaagaaggaagtgtc |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29610233 |
aatagtaacttgtctctcatttttttctgcttgtattttttaaccaagggagtgtatactgtgctccaccaaatagtgcaactgctaagaaggaagtgtc |
29610332 |
T |
|
| Q |
401 |
ttctgattgggctgatatggtggacgggtttcagaagctggcacttgagtcacggttaggcataccaatcatttattgtactgatgctattcatggtaac |
500 |
Q |
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| T |
29610333 |
ttctgattgggctgatatggtggacgggtttcagaagctggcacttgagtcacggttaggcataccaatcatttattgtactgatgctattcatggtaac |
29610432 |
T |
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| Q |
501 |
aacaacgtctatgctact |
518 |
Q |
| |
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| T |
29610433 |
aataacgtctatggtact |
29610450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 3 - 499
Target Start/End: Complemental strand, 29584972 - 29584480
Alignment:
| Q |
3 |
gttgtaccatttcaccatttagccatcagatctgttgaaacagctactgaaaacaagcatcacagtgaatatagcaagaactaagtcagatacatggatt |
102 |
Q |
| |
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||||| |||||||||||||| | |||| ||||| | ||||| |||| ||||||||||||||||| ||||||||||||| |||||| | |||||||| |
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| T |
29584972 |
gttgttccatttcaccatttggatatcaaatctgcagtaacagtaactgcaaacaagcatcacagtgtttatagcaagaactcagtcagttgcatggatt |
29584873 |
T |
|
| Q |
103 |
ccgtgtataggaatcccactgaaacggttgaagatcgcatcaaaaaccttctttctcttatgacattgaaagagaagattggtcagatgacccaaattga |
202 |
Q |
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| T |
29584872 |
ctgtgtatatgaatcccgctgaaccggttgaagctcgaatcaaaaaccttctttctcttatgactttgaaagagaagattggtcagatgactcaaattga |
29584773 |
T |
|
| Q |
203 |
acgttctgttactactccttctgccattaaagatttcaccattggtacactattactataaacatttgtgcttccttttac---tactttcatttcttgg |
299 |
Q |
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||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||| | ||| |||||| | |||| || | |||| |||| ||| |
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| T |
29584772 |
acgctctgttactactccttctgccataaaagacttcgccattggtactctatca-tatctacattttttcttctgattccttttactatcatatct--- |
29584677 |
T |
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| Q |
300 |
taatagtaacttgtctctcannnnnnnctgcttgtattttttaaccaagggagtgtatactgtgctccaccaaatagtgcaactgctaagaaggaagtgt |
399 |
Q |
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||||||||||||||| | || ||||| ||||||||| ||||||||| ||||||||||||||||| | ||||||| | |||||||||| | |
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| T |
29584676 |
---tagtaacttgtctctaattattttctccttgtcttttttaacttagggagtgtgtactgtgctccaccaaaaaatgcaacttcggagaaggaagtat |
29584580 |
T |
|
| Q |
400 |
cttctgattgggctgatatggtggacgggtttcagaagctggcacttgagtcacggttaggcataccaatcatttattgtactgatgctattcatggtaa |
499 |
Q |
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| T |
29584579 |
catctgattgggctgatttggtagacgggtttcagaagttggcccttgaatcgcggttaggcataccaatcatatatgggaccgatgctgttcatggtaa |
29584480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 25130314 - 25130239
Alignment:
| Q |
174 |
gagaagattggtcagatgacccaaattgaacgttctgttactactccttctgccattaaagatttcaccattggta |
249 |
Q |
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|||||||||||||| |||| |||||||||||| ||||| |||||||||||| ||| ||||| || ||||||||| |
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| T |
25130314 |
gagaagattggtcaaatgatccaaattgaacgcactgttgctactccttctgtcatcaaagacctctccattggta |
25130239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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