View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_12 (Length: 504)
Name: NF8503_low_12
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 452
Target Start/End: Complemental strand, 8163661 - 8163219
Alignment:
| Q |
5 |
aacgtattaaaacaagtacgctataatttcaatatattggaacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatc |
104 |
Q |
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| T |
8163661 |
aacgtattaaaacaagtgcgctagaatttcaatatatgggaacaagttgggcaagtctgaaaa--tgttgctagtaatgttggattcaccaatttccatc |
8163564 |
T |
|
| Q |
105 |
aaatactattgttgtgcatcgcaattgtcgcgacattgtgtggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagc |
204 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8163563 |
aaacactattgttgtgcatctcaattgtcgcgacattgtgtggctgaattcaggaaaaaactctggtcctgctccggaattgagtgagtaacttctaagc |
8163464 |
T |
|
| Q |
205 |
taaactgcgtttcaaaaggacgcatctttgannnnnnncatcctatcttctgtctcttttgttgagctctttatataatttctatacttctgcaaaacaa |
304 |
Q |
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| T |
8163463 |
taaactgcgtttcaaaaggactcatctttga-ttttttcatcctaccttttgtctcttttgttgagctctttatataatttctatacttctgcaaaacaa |
8163365 |
T |
|
| Q |
305 |
cattg-aagttacaatgttaataataatactccataagtttcagtttaaaatcacacaaaacacaagtagtagtatatcatcaacaagaggatatataga |
403 |
Q |
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| T |
8163364 |
cattgaaagtgacaatgttaataataatactccataaatttcagtttaaaatcacacaaaacgca---agtagtatattatcaacaagaggatatacaga |
8163268 |
T |
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| Q |
404 |
agctaatggagagatacttatattctattctaacaatacaacaagaaat |
452 |
Q |
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| T |
8163267 |
agctaatggagaaatacttatattctattctagcaatacaacaagaaat |
8163219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 45 - 436
Target Start/End: Original strand, 7316323 - 7316716
Alignment:
| Q |
45 |
aacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtg |
144 |
Q |
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|||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
7316323 |
aacaagttgggcaagtctgaaaaattgttgcttttaatgttggattcaccaatttccatccaatg---ttgttgtgcatcgcaattgtcgcgacattgtg |
7316419 |
T |
|
| Q |
145 |
tggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggacgcatctttgannnnnnnca |
244 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| | || |||||||||| | ||||| | || |
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| T |
7316420 |
tggctgaattcaggagaaaactctggtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggactcttctttta-ttttttca |
7316518 |
T |
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| Q |
245 |
tcctatcttctgtctcttttgttgagctctttatataatttctatacttctgcaaaacaacattgaagttacaatgttaataataata----ctccataa |
340 |
Q |
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||||| ||| ||| |||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
7316519 |
tcctaccttttgtatcttcagttgagctctttaaataatttctatacttctgcaaaacaatattgcagttacaatgttaataataatactagctccataa |
7316618 |
T |
|
| Q |
341 |
gtttcagtttaaaatcacacaaaa--cacaagtagtagtatatcatcaacaagaggatatatagaagctaatggagagatacttatattctattctaa |
436 |
Q |
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| T |
7316619 |
atttcagtttaaaatcacacaaaattgaacacaagtagtatattatcaacaagaggatatatagaagctaatggagaaatacttatattctattctaa |
7316716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 45 - 436
Target Start/End: Complemental strand, 7219724 - 7219331
Alignment:
| Q |
45 |
aacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtg |
144 |
Q |
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|||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |
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| T |
7219724 |
aacaagttgggcaagtcagaaaaaatgttgctaataatgtaggattcaccaatttccaaccaatgat---gttgtgcatcgcaattgtcgcgacattgtg |
7219628 |
T |
|
| Q |
145 |
tggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggacgcatctttgannnnnnnca |
244 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| | || |||||||||| | ||||| | || |
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| T |
7219627 |
tggctgaattcaggagaaaactctggtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggactcttcttt-aattttttca |
7219529 |
T |
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| Q |
245 |
tcctatcttctgtctcttttgttgagctctttatataatttctatacttctgcaaaacaacattgaagttacaatgttaataataata----ctccataa |
340 |
Q |
| |
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||||| ||| ||| |||| ||||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||| |||||||| |
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| T |
7219528 |
tcctaccttttgtatcttcagttgagctctttaaataatttctatacttctgcaaaacaatatagcagttacaatgttaataataatactagctccataa |
7219429 |
T |
|
| Q |
341 |
gtttcagtttaaaatcacacaaaa--cacaagtagtagtatatcatcaacaagaggatatatagaagctaatggagagatacttatattctattctaa |
436 |
Q |
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| T |
7219428 |
atttcagtttaaaatcacacaaaattgaacacaagtagtatattatcaacaagaggatatatagaagctaatgaagaaatacttatattctattctaa |
7219331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 7323558 - 7323612
Alignment:
| Q |
321 |
ttaataataatactccataagtttcagtttaaaatcacacaaaacacaagtagta |
375 |
Q |
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|||| |||||||||||| |||||||| ||| ||||||||||||||||| |||||| |
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| T |
7323558 |
ttaacaataatactccacaagtttcaatttcaaatcacacaaaacacatgtagta |
7323612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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