View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_13 (Length: 487)
Name: NF8503_low_13
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 8871334 - 8871780
Alignment:
| Q |
19 |
aaattaataagcaacacacacaatactaccaactaacattccaataaataaacagagtgaaactatttgaacaacaaacgttaacatcatgtgccctatc |
118 |
Q |
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| T |
8871334 |
aaattaataagcaacacacacaatactaccaactaacattccaataaataaacagagtgaaactatttgaacaacaaacgttaacatcatgtgccctatc |
8871433 |
T |
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| Q |
119 |
tctattttgtgagctacctaattaacatgatacatctcacattgatatatgtagacaagaaattggtgccctatgttccccgtcaccccagccactcttt |
218 |
Q |
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| T |
8871434 |
tctattttgtgagctacctaattaacatgatacatctcacattgatatatgtagacaagaaatcggtgccctatgttccccgtcaccccagccactcttt |
8871533 |
T |
|
| Q |
219 |
taccaccatcccttcaatgattccttgtcctttattcttctgcaaccccccaaggttatagctacttgcttctttagctaccattattgatgtagctgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8871534 |
taccaccatcccttcaatgattccttgtcctttattcttctgcaaccccccaaggttatagctacttgcttctttagctaccattattgatgtagctgaa |
8871633 |
T |
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| Q |
319 |
tatttgatgaactgcttctgctatgtcatttgctgtgcctagcttacaatcttcttcaatctgtatcacccatatatacagctcattattgatttattta |
418 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8871634 |
tatttgatgaactgcttctgctatatcatttgctgtgcctagcttacagtcttcttcaatctgtatcacccatatatacagctcattattgatttattta |
8871733 |
T |
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| Q |
419 |
tcaaataataataaatagaactaataaaaaacc--agaaaatttgtc |
463 |
Q |
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|||||||||||||||||| |||||||||||| | |||||||||||| |
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| T |
8871734 |
tcaaataataataaatagtactaataaaaaaacttagaaaatttgtc |
8871780 |
T |
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