View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_low_14 (Length: 473)
Name: NF8503_low_14
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 44911263 - 44910810
Alignment:
| Q |
1 |
gcgatgtctatagcttcggagttgtgctattggaactactatcagggcgcaatgctgttgataaaacaaaatcaggagcggaacataatctggtagattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44911263 |
gcgatgtctatagcttcggagttgtgctattggaactactatcagggcgcaatgctgttgataaaacaaaatcaggagcggaacataatctggtagattg |
44911164 |
T |
|
| Q |
101 |
ggcaagaccatacttgggtgatagaagaaagttgtttcggattatggacacaagattacaagggcagtatccacaaagggcggcttatacagctgcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44911163 |
ggcaagaccatacttgggtgatagaagaaagttgtttcggattatggacacaagattacaagggcagtatccacaaagggcggcttatacagctgcaatt |
44911064 |
T |
|
| Q |
201 |
cttgcgttacaatgtattagtgaggccaaatttagaccacaaatgtctgaggttttgacgactttggaaaacttgccagtcatcagacattcagctagtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44911063 |
cttgcgttacaatgtattagtgaggccaaatttagaccacaaatgtctgaggttttgacgactttggaaaacttgccagtcatcagacattcagctagtc |
44910964 |
T |
|
| Q |
301 |
cttctagattcgaggagaaaccgttcccaggtccaataagagaaagaatctgaagcctaattctgagaaaaactagcaaaatatccgtacatattgcata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44910963 |
cttctagattcgaggagaaaccgttcccaggtccaataagagaaagaatctgaagcctaattctgagaaaaactagcaaaatatccgtacatattgcata |
44910864 |
T |
|
| Q |
401 |
ggtgtaaaagaggacaatgtaatacaggtttattttctcttcatgtagacctct |
454 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44910863 |
ggtgtaaaagaggataatgtaatacaggtttattttctctttatgtagacctct |
44910810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University