View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_16 (Length: 467)
Name: NF8503_low_16
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 27443528 - 27443091
Alignment:
| Q |
18 |
acatgcagagtggaagaagatgaataaagaaactcatagttcatctttctctcaaagcttcatagatattgctataaattatggtagagtggcaatgttc |
117 |
Q |
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| T |
27443528 |
acatgcagagtggaagaagatgaataaagaagctcatagttcatctttctctcatagcttcatagatattgctataaattatggtagagtggcaatgttc |
27443429 |
T |
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| Q |
118 |
atgtaccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcattaatttttcggcccattccataaaaggttttgtcgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27443428 |
atgtaccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcattcatttttcggcccattccataaaaggttttgtcgt |
27443329 |
T |
|
| Q |
218 |
ggagacggcgggtgttatatttattagcaataaagatagaaaaggaaagttaagacgaagaatgaagtacacattactagttgagttacatttgtaattt |
317 |
Q |
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|||||| | ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443328 |
ggagacag---gtgttatgtttattagcaataaagatagaaaaggaaagttaagactaggaatgaagtacacattactagttgagttacatttgtaattt |
27443232 |
T |
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| Q |
318 |
caatttcatttcgtgcttatttagttagttatgacagtaatgatgagctgatactgctcaagtgaatatttcgtgcttgtacaattcacgttatattgaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27443231 |
caatttcatttcgtgcttatttagttagttatgacagtaatgatgagctgataatgctcaagtgaatatttcgtgcttgtacaattcaccttatattgaa |
27443132 |
T |
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| Q |
418 |
tcagaaattcagttttcatatttgtttctcaaagttcatct |
458 |
Q |
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| T |
27443131 |
tcagaaattcagttttcatatttgtttctcaaagttcatct |
27443091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 27406276 - 27406096
Alignment:
| Q |
23 |
cagagtggaagaagatgaataaagaaactcatagttcatctttctctcaaagcttcatagatattgctataaattatggtagagtggcaatgttcatgta |
122 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27406276 |
cagagtggaagaagatgaatatagaagttcatagttcatctttctctcaaagtttcatagatattgctataaattatgatagagtggcaatgttcatgta |
27406177 |
T |
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| Q |
123 |
ccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcattaatttttcggcccattccataaa |
205 |
Q |
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| T |
27406176 |
ccaacatggagacggccattccattcaagatactgatatgcaacatcacataatgtcattaa--tttcggcccattccataaa |
27406096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 27325746 - 27325570
Alignment:
| Q |
24 |
agagtggaagaagatgaataaagaaactcatagttcatctttctctcaaagcttcatagatattgctataaattatggtagagtggcaatgttcatgtac |
123 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||| ||| ||||| || |||| ||||| |||| ||||| |
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| T |
27325746 |
agagtggaagaagatgaataaagaagctcatggttcatctttctctcaatgtttcatagatacagctgtaaatcttgctagaatggcattgtttatgtat |
27325647 |
T |
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| Q |
124 |
caacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcattaatttttcggcccattcc |
200 |
Q |
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| T |
27325646 |
catcatggagatggccatactattcaagctcctgaaattaagaatcgcataacatcgttagtttttcagcctattcc |
27325570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 27442841 - 27442785
Alignment:
| Q |
149 |
aagatactgaaatgcaaaatcgcataatgtcattaatttttcggcccattccataaa |
205 |
Q |
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| T |
27442841 |
aagatactgatatgcaaaatcacataatgtcattaatttttcggcccattccataaa |
27442785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 27443104 - 27443027
Alignment:
| Q |
50 |
ctcatagttcatctttctctcaaagcttcatagatattgctataaattatggtagagtggcaatgttcatgtaccaacatggagacgg |
137 |
Q |
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|||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
27443104 |
ctcaaagttcatctttctctcaaagtttcattgatattgctataa----------agtggcaatgttcatgcaccaacatggagacgg |
27443027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 25079606 - 25079546
Alignment:
| Q |
306 |
catttgtaatttcaatttcatttcgtgcttatttagttagttatgacagtaatgatgagct |
366 |
Q |
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| T |
25079606 |
catttgaaaattcagtttcatttcgcgctcatttagttagttatcacagttatgatgagct |
25079546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 18845531 - 18845692
Alignment:
| Q |
28 |
tggaagaagatgaataaagaaactcatagttcatctttctctcaaagcttcatagatattgctataaattatggtagagtggcaatgttcatgtaccaac |
127 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||| ||| |||| | ||||||||||||||| |
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| T |
18845531 |
tggaagaagatgaataaagaagctcaaagttcatctttctctcaaaatttcatagatacaaatatgaatgcatttagaatatgtatgttcatgtaccaat |
18845630 |
T |
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| Q |
128 |
atggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcattaattttt |
189 |
Q |
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||||||| || ||| ||||| |||| || ||||||| |||||||| ||||||||| ||||| |
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| T |
18845631 |
atggagatggttatagcattccagatcctaaaatgcagaatcgcattatgtcattagttttt |
18845692 |
T |
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