View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8503_low_19 (Length: 450)

Name: NF8503_low_19
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8503_low_19
NF8503_low_19
[»] chr5 (7 HSPs)
chr5 (1-433)||(5663737-5664169)
chr5 (44-226)||(5046332-5046515)
chr5 (44-226)||(5047103-5047286)
chr5 (44-226)||(5047874-5048057)
chr5 (280-431)||(5047683-5047833)
chr5 (280-431)||(5046912-5047062)
chr5 (5-92)||(5664811-5664895)
[»] chr8 (1 HSPs)
chr8 (33-433)||(1275221-1275616)
[»] chr7 (1 HSPs)
chr7 (44-286)||(22622406-22622650)
[»] chr1 (4 HSPs)
chr1 (66-433)||(22055518-22055878)
chr1 (70-288)||(22056597-22056817)
chr1 (156-325)||(29372954-29373123)
chr1 (53-145)||(29371869-29371961)
[»] scaffold0406 (2 HSPs)
scaffold0406 (44-226)||(6164-6347)
scaffold0406 (280-433)||(5971-6123)
[»] chr4 (9 HSPs)
chr4 (44-286)||(28786834-28787075)
chr4 (44-211)||(51246521-51246689)
chr4 (44-226)||(24853230-24853413)
chr4 (44-212)||(17525522-17525691)
chr4 (44-184)||(28787887-28788027)
chr4 (239-367)||(28787759-28787883)
chr4 (44-223)||(24856133-24856304)
chr4 (293-426)||(6824115-6824247)
chr4 (280-413)||(17525746-17525878)
[»] chr3 (8 HSPs)
chr3 (44-212)||(12739240-12739409)
chr3 (44-212)||(12738089-12738258)
chr3 (145-286)||(1896723-1896865)
chr3 (145-286)||(1906169-1906311)
chr3 (194-287)||(2932818-2932913)
chr3 (67-206)||(15022963-15023103)
chr3 (195-282)||(1888660-1888748)
chr3 (167-212)||(12737463-12737509)
[»] chr2 (1 HSPs)
chr2 (44-204)||(20978872-20979034)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 5663737 - 5664169
Alignment:
Q  1 atatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5663737 atatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaact 5663836  T
Q  101 agaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatctaaaacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5663837 agaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctacaatttaatttagacattaatagaacaatctaaaacat 5663936  T
Q  201 gtagcaactttaagctactctagtttctctgattagacattgtcattttttaactagaatattctaaaaatatgtatcaatttcaaaaatcatccttgat 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5663937 gtagcaactttaagctactctagtttctctgatcagacattgtcattttttaactagaatattctaaaaatatgtatcaatttcaaaactcatccttgat 5664036  T
Q  301 gcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattgcttttcatggttgatcaattt 400  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5664037 gcacatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattgctttttatggttgatcaattt 5664136  T
Q  401 atcaagtgttacctccaccgtgatagtaaattt 433  Q
      |||||||||||||||||||||||||||||||    
T  5664137 gacaagtgttacctccaccgtgatagtaaattt 5664169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 5046515 - 5046332
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| || | ||||||  |||||||    
T  5046515 aatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctacacaagattat 5046416  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 226  Q
    |||||||||||||||||| ||| ||||  |||||||||||| ||||||||| ||||||| |||||||||| | || ||||||||    
T  5046415 tatagatgtttctaggctttaacttaacctagacattaataaaacaatctataaacatgaagcaactttatgttattctagttt 5046332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 5047286 - 5047103
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| || | |||| |  |||||||    
T  5047286 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctagacaagattat 5047187  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatct-aaaacatgtagcaactttaagctactctagttt 226  Q
    |||||||| ||| ||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||||| | || ||||||||    
T  5047186 tatagatggttcaaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttt 5047103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 5048057 - 5047874
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||| ||||||||||| | ||||||||||||||| || | ||||||  |||||||    
T  5048057 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttgtttgccttatctacacaagattat 5047958  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatct-aaaacatgtagcaactttaagctactctagttt 226  Q
    |||||||| ||| ||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||||| | || ||||||||    
T  5047957 tatagatggttcaaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttt 5047874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 431
Target Start/End: Complemental strand, 5047833 - 5047683
Alignment:
Q  280 atttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattg 379  Q
    ||||||| | || ||||||||||||||||| |||||| |||||    |||||| ||||||| |||| ||||||||| || ||||||||  || |||||||    
T  5047833 atttcaacactcctccttgatgcatatttcgaaaacttcaaat----gtagtacgtagttgttcaaacatagatttgtgctatcatctcctcctgcattg 5047738  T
Q  380 ---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaat 431  Q
       || ||||| ||||||||||||  || |||||||||||||| |||||| ||||    
T  5047737 atactcttcatagttgatcaatttgacaggtgttacctccaccatgatagaaaat 5047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 431
Target Start/End: Complemental strand, 5047062 - 5046912
Alignment:
Q  280 atttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattg 379  Q
    ||||||| | || ||||||||||||||||| |||||| ||    ||||||||| ||||||| |||| ||||||||| || |||||| |  |  |||||||    
T  5047062 atttcaacactcctccttgatgcatatttcgaaaacttca----aatgtagtacgtagttgttcaaacatagatttgtgctatcatatccttctgcattg 5046967  T
Q  380 ---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaat 431  Q
       || ||||| ||||||||||||  || |||||||||||||| |||||| ||||    
T  5046966 atactcttcatagttgatcaatttgacaggtgttacctccaccatgatagaaaat 5046912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 5664811 - 5664895
Alignment:
Q  5 ggaagcccttaatat-attgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgttt 92  Q
    ||||||||| ||||| ||||| |||||||||||| | || |||||||| |||||||||||| ||    |||| ||||||||||||||||    
T  5664811 ggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtc----tataggtgcttgaagatgttt 5664895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 33 - 433
Target Start/End: Original strand, 1275221 - 1275616
Alignment:
Q  33 ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttcta 132  Q
    ||||| |||| |||||||| |||||||||||  | || ||||| |||||||||| |||||||| |||||||    ||||||||||||||| || ||||||    
T  1275221 ttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactagat---tctaggcctttgtttgccatttcta 1275317  T
Q  133 cattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctag-tttctct 230  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||||||| || |||||| ||||||||||||||||| || || ||||| |||||||    
T  1275318 cattagattattatagatgtttctaagctataacttaatttatacattaataaaataatctagaaacatgtagcaactttgagttattctagttttctct 1275417  T
Q  231 gattagacattgtcattttttaactagaatattctaaaaatatgtatcaatttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtag 330  Q
     | ||||| | ||  | | |||||||||| |||||| ||||||||||||||||||| | || |||||||||||||||||| ||||||||    ||||||     
T  1275418 -aatagacgtcgt--tatattaactagaaaattctagaaatatgtatcaatttcaacactcctccttgatgcatatttcagaaactcca----aatgtaa 1275510  T
Q  331 tatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattg---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagt 427  Q
    |  |||||||||||| ||||||||| |||||||||||| || | |||||   || ||||| |||||| |||||  ||||| ||||||||||| |||||||    
T  1275511 tgcgtagttgctcaaacatagatttgtgatatcatcttttcctacattgatactcttcatagttgattaatttgacaagtcttacctccaccatgatagt 1275610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 22622406 - 22622650
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||| || ||||| | |||||| |||||||| || ||||||||||||| |||    
T  22622406 aatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatat 22622505  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagtttctctgattagacattg 242  Q
    | ||||||||| ||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| | |||||| |   | ||||||||     
T  22622506 tgtagatgtttttaggctacaatttaatctagatattaatagaacaatctagaaacatgtggcaactttaagctattatagttttttctaatagacatta 22622605  T
Q  243 tcatt-ttttaactagaatattctaaaaatatgtatcaatttcaa 286  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  22622606 tcattattttaactagaatattctagaaatatgtatcaatttcaa 22622650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 66 - 433
Target Start/End: Original strand, 22055518 - 22055878
Alignment:
Q  66 tctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataa 165  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||    
T  22055518 tctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaa 22055617  T
Q  166 tttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctag-tttctctgattagacattgtcat-tttttaactagaatat 262  Q
    |||||| ||||||||||| |||||||||| |||||| |||||| ||||||||| | ||| ||||||| | ||||||||||||| |||||||||| | |||    
T  22055618 tttaatctagacattaattgaacaatctagaaacatttagcaaatttaagctattatagttttctct-aatagacattgtcatatttttaactatattat 22055716  T
Q  263 tctaaaaatatgtatcaatttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatat 362  Q
    | || | ||||||||||||||||| | || ||||| ||| || |||| |||||||||    ||| |||||  |||| |||||| ||        ||||||    
T  22055717 tttagagatatgtatcaatttcaacactcctccttaatgtatgtttcgaaaactcca----aatctagtacatagtagctcaaaca--------tgatat 22055804  T
Q  363 catcttgtcatgcattg---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaattt 433  Q
    |||||  ||||||||||   |||||||| ||||||||||||  ||||||||||||| ||| |||||||||||||    
T  22055805 catctcctcatgcattgatacttttcatagttgatcaattttacaagtgttacctctaccatgatagtaaattt 22055878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 22056597 - 22056817
Alignment:
Q  70 tttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataattta 169  Q
    |||||| |||||||||||| |||||| |||||||| | ||||||| ||||||| || ||||||||||||||||| |||||||||| ||||||| || |||    
T  22056597 tttataggtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatcatagatgtttttaggctacaaatta 22056696  T
Q  170 atttagacattaatagaacaatcta-aaacatgtagcaacttt-aagctactctag-tttctctgattagacattgtcattttttaactagaatattcta 266  Q
    || |||||||||| ||||||||||| ||| ||| || |||||| |||||| | ||| ||||||| | |||||| || ||| ||||||||||| || | |     
T  22056697 atctagacattaacagaacaatctagaaatatgaagtaactttaaagctattatagttttctct-aatagacactggcatattttaactagattactttg 22056795  T
Q  267 aaaatatgtatcaatttcaaaa 288  Q
     |||||||||||||||||||||    
T  22056796 gaaatatgtatcaatttcaaaa 22056817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 29373123 - 29372954
Alignment:
Q  156 taggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactcta-gtttctctgattagacattgtcat-ttttta 252  Q
    ||||||| || ||||| |||| |||| |||||||||||| ||||||||||||||||||| ||| ||||   |||||| | ||||||||||||| ||||||    
T  29373123 taggctacaacttaatctagatattagtagaacaatctagaaacatgtagcaactttaaactattctataattctct-aatagacattgtcatattttta 29373025  T
Q  253 actagaatattctaaaaatatgtatcaatttcaaaaatcatccttgatgcatatttcaaaaactccaaattaa 325  Q
    |||| | ||||||| ||| ||||||||  |||||   || ||||| |||||||| || |||||||||||||||    
T  29373024 actaaattattctagaaacatgtatca--ttcaactctcctccttaatgcatatgtcgaaaactccaaattaa 29372954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 29371961 - 29371869
Alignment:
Q  53 gcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattatta 145  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||| ||| | ||||| | ||||||| || |||| |||||| |||||||    
T  29371961 gcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatctagacttttgtttgccttttccacattacattatta 29371869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 6347 - 6164
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    ||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | ||||||||||||||| || | ||| ||  |||||||    
T  6347 aatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttgtttgccttatctgcacaagattat 6248  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatct-aaaacatgtagcaactttaagctactctagttt 226  Q
    |||||||||||||||||| ||| ||||  |||||||||||||||||||||  |||||||||||||||||| | || ||||||||    
T  6247 tatagatgtttctaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttt 6164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 433
Target Start/End: Complemental strand, 6123 - 5971
Alignment:
Q  280 atttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattg 379  Q
    ||||||| | || ||||||||||||||||| |||||| |||||    ||||||  ||||||||||| ||||||||| || |||||||   || |||||||    
T  6123 atttcaacactcctccttgatgcatatttcgaaaacttcaaat----gtagtacttagttgctcaaacatagatttgtgctatcatcccctcctgcattg 6028  T
Q  380 ---cttttcatggttgatcaatttatcaagtgttacctccaccgtgatagtaaattt 433  Q
       || ||| | ||||||||||||  || |||||||||||||| |||||| ||||||    
T  6027 aaactcttcgtagttgatcaatttgacaggtgttacctccaccatgatagaaaattt 5971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 28787075 - 28786834
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| ||||| |||||  |||||||||| ||||||||||||||||||| |||||  | | | ||||||||||| |||| ||||||||| |||| ||    
T  28787075 aatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta--ataatttaggcctttgtattccttttctacataagataat 28786978  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctag-tttctctgattagacatt 241  Q
    ||||||||||||||||||| || |||||  ||||||||||| |||||| || |||||||||||||||||||| || ||||| ||||||| ||   | |||    
T  28786977 tatagatgtttctaggctacaacttaatcgagacattaatataacaatttagaaacatgtagcaactttaagttattctagttttctctaat--aaaatt 28786880  T
Q  242 gtcatt-ttttaactagaatattctaaaaatatgtatcaatttcaa 286  Q
    ||||||  ||||||||||||||| || |||||| ||||||||||||    
T  28786879 gtcattaatttaactagaatattttagaaatatatatcaatttcaa 28786834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 51246689 - 51246521
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||||||||||||||| || | ||||||  |||||||    
T  51246689 aatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattat 51246590  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttt 211  Q
    |||||||||||||||||| ||| ||||  |||||||||||||| ||||||| |||||| ||||||||||    
T  51246589 tatagatgtttctaggctttaacttaacctagacattaatagagcaatctagaaacatctagcaacttt 51246521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 24853413 - 24853230
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| ||| ||| |||| |||||||||| ||| | |||||||||| || |||||||| | | ||||||||||||| || |||||||||||||||||    
T  24853413 aatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataatttaggcctttgtttgccttttctacattagattat 24853314  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagttt 226  Q
    ||||||||||||| |||||||| |||||||| | ||||||||||||||||| |||||| ||| ||||||| | || ||||||||    
T  24853313 tatagatgtttcttggctataacttaatttatatattaatagaacaatctagaaacatttagaaactttatgttattctagttt 24853230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 17525522 - 17525691
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    ||||||||  ||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||||| || | ||||||  |||||||    
T  17525522 aatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattat 17525621  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 212  Q
    |||||||||||||||||| ||| ||||  ||||||||||||||| |||| | ||||||||||||||||||    
T  17525622 tatagatgtttctaggctttaacttaacctagacattaatagaataatcaagaaacatgtagcaacttta 17525691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 28788027 - 28787887
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||| | |||||||||||||||||| ||| |||||||||| ||    
T  28788027 aatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttgttttccttttgtacattagataat 28787928  T
Q  144 tatagatgtttctaggctataatttaatttagacattaata 184  Q
    ||||||| ||||||||||| || |||||  ||||| |||||    
T  28787927 tatagatatttctaggctacaacttaatcgagacaataata 28787887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 367
Target Start/End: Complemental strand, 28787883 - 28787759
Alignment:
Q  239 attgtcatt-ttttaactagaatattctaaaaatatgtatcaatttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtagtatgtag 337  Q
    ||||||||| |||||||| |||| ||||| ||||||||||||||||||| | || |||||||||||| ||||||||||||||    | |||||||  |||    
T  28787883 attgtcattattttaactggaatgttctagaaatatgtatcaatttcaacactcctccttgatgcat-tttcaaaaactcca----attgtagtacctag 28787789  T
Q  338 ttgctcaatcatagatttttgatatcatct 367  Q
    |||||| | ||||||||| |||||||||||    
T  28787788 ttgctcgaacatagatttgtgatatcatct 28787759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 24856304 - 24856133
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| ||| ||  |||| |||||||||| ||| | ||| ||||||||| |||||||| | ||||||||||||||| || || ||||||||    ||    
T  24856304 aatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctaggcctttgtttgcctttcctacatta----at 24856209  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctag 223  Q
    |     ||||| |||||| ||| ||||  |||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  24856208 t-----tgtttataggctttaacttaaactagacattaatagaacaatctagaaacatgtagcaactttaagttattctag 24856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 426
Target Start/End: Original strand, 6824115 - 6824247
Alignment:
Q  293 tccttgatgcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattg---cttttcatgg 389  Q
    ||||||||||||||||| |||||| |||||    |||||| |||||||||||| ||||||||| || ||||||||  || |||||||   || ||||| |    
T  6824115 tccttgatgcatatttcgaaaacttcaaat----gtagtacgtagttgctcaaacatagatttgtgttatcatctcctcctgcattgaaactcttcatag 6824210  T
Q  390 ttgatcaatttatcaagtgttacctccaccgtgatag 426  Q
    |||||||||||  || |||||| ||||||| ||||||    
T  6824211 ttgatcaatttgacaggtgttagctccaccatgatag 6824247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 413
Target Start/End: Original strand, 17525746 - 17525878
Alignment:
Q  280 atttcaaaaatcatccttgatgcatatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatatcatcttgtcatgcattg 379  Q
    ||||||| | || ||||||||||||||||| |||||| |||||    |||||| |||||||||||| |||||||||| | ||||||||  || |||||||    
T  17525746 atttcaacactcctccttgatgcatatttcgaaaacttcaaat----gtagtacgtagttgctcaaacatagattttcgctatcatctcctcttgcattg 17525841  T
Q  380 ---cttttcatggttgatcaatttatcaagtgttacc 413  Q
       || ||||| ||||||||||||  || ||||||||    
T  17525842 atactcttcatagttgatcaatttgacaggtgttacc 17525878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 12739409 - 12739240
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| ||| ||| |||||||||||||||  |||||| ||||||||||| ||||| || | ||||||| ||||||| || ||||||||  |||||||    
T  12739409 aatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctacacaagattat 12739310  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 212  Q
    |||||||||||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||||||||||    
T  12739309 tatagatgtttctaggctgtaacttaacctagatattaatagaacaatctagaaacatgtagcaacttta 12739240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 12738258 - 12738089
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 143  Q
    |||||||| ||||||| |||| | |||||||| ||||||| ||||||||||| ||||| ||   ||||||| ||||||| || ||||||||  |||| ||    
T  12738258 aatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctacacaagataat 12738159  T
Q  144 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 212  Q
    ||| |||||||||||||| ||  ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  12738158 tattgatgtttctaggctttaccttaatctagacattaatagaacaatctacaaacatgtagcaacttta 12738089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 1896865 - 1896723
Alignment:
Q  145 atagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagtttctctgattagacattgt 243  Q
    |||||||||||||||||| || ||||  ||| ||| ||||||||||| || |||||||| |||||||||||||| |||||||| ||| || |||||||||    
T  1896865 atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagtttttctaat-agacattgt 1896767  T
Q  244 cattttttaa-ctagaatattctaaaaatatgtatcaatttcaa 286  Q
    |||||||||| ||||||||||||| |||||| |||| |||||||    
T  1896766 cattttttaaactagaatattctagaaatatttatctatttcaa 1896723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 1906311 - 1906169
Alignment:
Q  145 atagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctagtttctctgattagacattgt 243  Q
    |||||||||||||||||| || ||||  ||| ||| ||||||||||| || |||||||| |||||||||||||| |||||||| ||| || |||||||||    
T  1906311 atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagtttttctaat-agacattgt 1906213  T
Q  244 cattttttaa-ctagaatattctaaaaatatgtatcaatttcaa 286  Q
    |||||||||| ||||||||||||| |||||| |||| |||||||    
T  1906212 cattttttaaactagaatattctagaaatatttatctatttcaa 1906169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 2932818 - 2932913
Alignment:
Q  194 aaaacatgtagcaactttaagctactctagtttctctgattagacattgtcatttt--ttaactagaatattctaaaaatatgtatcaatttcaaa 287  Q
    |||| ||||||||||||||||||| |||||||| |   | ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  2932818 aaaatatgtagcaactttaagctattctagttttttctaatagacattgtcattttttttaactagaatattctagaaatatgtatcaatttcaaa 2932913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 15023103 - 15022963
Alignment:
Q  67 ctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataat 166  Q
    ||||||||| ||||||| ||||||||||| ||||| || | ||||||| ||||||| || | ||||||  |||||||||||||||||| ||| || |||     
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctacacaagattattatagatgtttttagactttaac 15023004  T
Q  167 ttaatttagacattaatagaacaatcta-aaacatgtagca 206  Q
    | ||  || ||||||||||||||||||| |||||| |||||    
T  15023003 tgaacctaaacattaatagaacaatctagaaacatatagca 15022963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 1888748 - 1888660
Alignment:
Q  195 aaacatgtagcaactttaagctactctagtttctctgattagacattgtcatttttt-aactagaatattctaaaaatatgtatcaatt 282  Q
    ||||||||||||||||| ||||| ||| |||| |   | |||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  1888748 aaacatgtagcaacttttagctattcttgttttttctaatagacattgtcatttttttaactagaatattctagaaatatgcatcaatt 1888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 12737509 - 12737463
Alignment:
Q  167 ttaatttagacattaatagaacaatcta-aaacatgtagcaacttta 212  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  12737509 ttaatctagacattaatagaacaatctacaaacatgtagcaacttta 12737463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 20978872 - 20979034
Alignment:
Q  44 aatacaatcgcacccatataattctatttataagtgctt-gaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagatta 142  Q
    |||| ||| |||||||||||| | |||||||| || ||| | ||||||||||| |||||||| | ||||  ||||||||| || | ||||||  | ||||    
T  20978872 aatataatggcacccatataagtttatttataggtactttgtagatgtttctagaactagaataatctatacctttgtttgccttatctacacaatatta 20978971  T
Q  143 ttatagatgtttctaggctataatttaatttagacattaatagaacaatcta-aaacatgtag 204  Q
    ||||||||||||||||||| ||| ||||  || |||| |||||||||||||| ||||||||||    
T  20978972 ttatagatgtttctaggctttaacttaacctaaacatgaatagaacaatctagaaacatgtag 20979034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University