View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_2 (Length: 728)
Name: NF8503_low_2
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 323 - 711
Target Start/End: Original strand, 37958462 - 37958834
Alignment:
| Q |
323 |
gagcgagaattaaatcaacacaaaaaactatctaacctcacatcagaacacccaacctcgattaaacaagaagaataatactagaaaaagaacctcacag |
422 |
Q |
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| T |
37958462 |
gagcgagaattaaatcaacacaaaaaactatctaacctcacatcagaataccttacctcggttaaacaagaagattaatactaggaaaagaacctcacac |
37958561 |
T |
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| Q |
423 |
tcaaccaactcttgtacaaatccaccacatgatactatcgatgtgaacacagagtaagttcataatcttat--------agaataggtgtgaccataata |
514 |
Q |
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| T |
37958562 |
tcaaccaacccttgtacaaatccacc------------cg-tgttaacacagagtaagttcataatcttattcatacaaggaataggtgtgaccataata |
37958648 |
T |
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| Q |
515 |
nnnnnnnnncttttcaaaaaccattccaaaaggtgaatttaaccatagaatagtgccaacaacactatctccaacacttttaaaatgggttcaacttatt |
614 |
Q |
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| T |
37958649 |
ttttttttttctttcaaaaaccattccaaaaggtgaatttaaccatagaatagtgccaacaacactatctccaacacttttaaaatgggttc-------- |
37958740 |
T |
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| Q |
615 |
attaacttattattagcaacaaaaagaagaagaagagaacttaaatctaagtctaacagttctggtggggatctaaaacccaaacacataaattttc |
711 |
Q |
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| T |
37958741 |
---aacttattattagcaacaaaaagaagaagaagagaacttaaatctaagtctaacagttctggtggggatctaaaacccaaacacataaattttc |
37958834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37958144 - 37958299
Alignment:
| Q |
1 |
gaaccattagagactgtttgattttgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaagataataaaataaaatctgttttga |
100 |
Q |
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| T |
37958144 |
gaaccattagagact--ttgattttgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaagataataaaataaaatctgttttga |
37958241 |
T |
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| Q |
101 |
aatcatatttctaaaaatcatctccgagatgaagnnnnnnncgtgtttggaacaattg |
158 |
Q |
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| T |
37958242 |
aatcatatttctaaaaatcatctccgagatgaagaaaaaaacgtgtttggaacaattg |
37958299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 49219757 - 49219678
Alignment:
| Q |
25 |
tgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaagataataaaataaaatctgttttgaaatc |
104 |
Q |
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| T |
49219757 |
tgtttttaaaaattgttttgtaaatcaatttcagaaaactatttttgagaagataactaaataaaatttgtttggaaatc |
49219678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 13032471 - 13032550
Alignment:
| Q |
25 |
tgtttttaaaaattgttttataaatcaatttaagaaaactgcttttcagaagataataaaataaaatctgttttgaaatc |
104 |
Q |
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| T |
13032471 |
tgtttttaaaaattgttttctaaatcattttcagaaaagtatttttgggaatataacaaaataaaatctgtttggaaatc |
13032550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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