View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8503_low_20 (Length: 437)

Name: NF8503_low_20
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8503_low_20
NF8503_low_20
[»] chr8 (3 HSPs)
chr8 (213-368)||(3390175-3390330)
chr8 (47-105)||(3390684-3390742)
chr8 (321-385)||(34162632-34162696)
[»] chr2 (4 HSPs)
chr2 (247-403)||(38431869-38432027)
chr2 (266-388)||(9397641-9397764)
chr2 (323-388)||(9397371-9397436)
chr2 (299-366)||(8184989-8185056)
[»] chr1 (2 HSPs)
chr1 (247-370)||(24563965-24564089)
chr1 (320-388)||(27829190-27829258)
[»] chr7 (4 HSPs)
chr7 (320-388)||(29361468-29361536)
chr7 (326-388)||(38014383-38014445)
chr7 (320-388)||(5560554-5560622)
chr7 (247-385)||(29139876-29140007)
[»] chr4 (3 HSPs)
chr4 (247-388)||(28721956-28722097)
chr4 (322-388)||(45571587-45571653)
chr4 (322-386)||(23247185-23247249)
[»] chr5 (3 HSPs)
chr5 (299-380)||(8482028-8482110)
chr5 (320-384)||(32251250-32251314)
chr5 (323-380)||(8472863-8472917)
[»] chr3 (1 HSPs)
chr3 (356-396)||(11341386-11341426)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 213 - 368
Target Start/End: Complemental strand, 3390330 - 3390175
Alignment:
Q  213 agattcaaaagatatacaataaagatgataaccttcctttcactctatagcattctctagtcgctaaacttaattattcataactgtctttcccttctac 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390330 agattcaaaaggtatacaataaagatgataaccttcctttcactctatagcattctctagtcgctaaacttaattattcataactgtctttcccttctac 3390231  T
Q  313 cctttcaggctatttaaagactttctaagaatatccgaagtaacaactcttaacaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390230 cctttcaggctatttaaagactttctaagaatatccgaagtaacaactcttaacaa 3390175  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 3390742 - 3390684
Alignment:
Q  47 caattgttttttaagtagttttagtatataactacaatctaacaagtattaggtaacta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390742 caattgttttttaagtagttttagtatataactacaatctaacaagtattaggtaacta 3390684  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 34162632 - 34162696
Alignment:
Q  321 gctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttat 385  Q
    ||||||| ||||||||||||| ||| || || |||||||||||||||||| | ||||||||||||    
T  34162632 gctatttgaagactttctaagcataaccaaaataacaactcttaacaaccacataacaaacttat 34162696  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 403
Target Start/End: Complemental strand, 38432027 - 38431869
Alignment:
Q  247 tcctttcactctatagcattctctagtcgctaaacttaattattcataa--ctgtctttcccttctaccctttcaggctatttaaagactttctaagaat 344  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||||| ||  ||  |||||| ||||||||||   |||||| | ||||||||||||||||    
T  38432027 tcctttcacactagagcattctctagtcactatacttaattattcaaaaaactaactttcctttctacccttgagggctatgtgaagactttctaagaat 38431928  T
Q  345 atccgaagtaacaactcttaacaaccccctaacaaacttatcaattttctaaactaact 403  Q
    | || || |||||||||||||||||| ||||||||||||||||| |  |||||||||||    
T  38431927 aaccaaactaacaactcttaacaaccacctaacaaacttatcaactaactaaactaact 38431869  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 388
Target Start/End: Complemental strand, 9397764 - 9397641
Alignment:
Q  266 tctctagtcgctaaacttaattattcataa-ctgtctttcccttctaccctttcaggctatttaaagactttctaagaatatccgaagtaacaactctta 364  Q
    ||||||||| ||||| ||||||||||| || || |||||||| |||||||||   ||||||||||| |||| ||||||||| || || |||||| |||||    
T  9397764 tctctagtcactaaatttaattattcaaaaactatctttcccctctacccttgagggctatttaaaaacttgctaagaataaccaaaataacaagtctta 9397665  T
Q  365 acaaccccctaacaaacttatcaa 388  Q
    ||||||  ||||||||||||||||    
T  9397664 acaaccaactaacaaacttatcaa 9397641  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 9397436 - 9397371
Alignment:
Q  323 tatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
    ||||||||||||||||| ||||| |  || ||||| |||||||||||| |||||||||||||||||    
T  9397436 tatttaaagactttctaggaataactaaaataacagctcttaacaaccacctaacaaacttatcaa 9397371  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 8185056 - 8184989
Alignment:
Q  299 tctttcccttctaccctttcaggctatttaaagactttctaagaatatccgaagtaacaactcttaac 366  Q
    |||||||| |||| |||||  |||||||||||||||||||||| |||  | || ||||||||||||||    
T  8185056 tctttcccctctatcctttagggctatttaaagactttctaaggataagcaaaataacaactcttaac 8184989  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 24563965 - 24564089
Alignment:
Q  247 tcctttcactctatagcattctctagtcgctaaacttaattattc-ataactgtctttcccttctaccctttcaggctatttaaagactttctaagaata 345  Q
    ||||||||| ||||||||||||||| || |||||||||||||||| | |||| |||||||| ||||||| |   |||||||||||||| || ||||||||    
T  24563965 tcctttcacactatagcattctctaatcactaaacttaattattcaaaaactatctttcccctctacccatgagggctatttaaagacattataagaata 24564064  T
Q  346 tccgaagtaacaactcttaacaacc 370  Q
     || || |||||||| |||| ||||    
T  24564065 accaaaataacaacttttaaaaacc 24564089  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 27829190 - 27829258
Alignment:
Q  320 ggctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
    |||||||||||||||||| ||| ||| || || ||||| ||||||| |||| |||||||||||||||||    
T  27829190 ggctatttaaagactttccaaggataaccaaaataacatctcttaataaccacctaacaaacttatcaa 27829258  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 29361536 - 29361468
Alignment:
Q  320 ggctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
    |||||||||||||||| ||||||||| || || |||||||||||||||||| ||||||||| |||||||    
T  29361536 ggctatttaaagacttcctaagaataaccaaaataacaactcttaacaaccacctaacaaatttatcaa 29361468  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 38014445 - 38014383
Alignment:
Q  326 ttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
    |||||||||||||||||||| || || |||||||| ||||||||| |||||||||||||||||    
T  38014445 ttaaagactttctaagaataaccaaaataacaacttttaacaaccacctaacaaacttatcaa 38014383  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 5560554 - 5560622
Alignment:
Q  320 ggctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
    ||||||||||||||||| |||||||| || || ||||||||  |||||||| |||||||||||||||||    
T  5560554 ggctatttaaagactttataagaataaccaaaataacaacttctaacaaccacctaacaaacttatcaa 5560622  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 385
Target Start/End: Original strand, 29139876 - 29140007
Alignment:
Q  247 tcctttcactctatagcattctctagtcgctaaacttaattattcataactgtctttcccttctaccctttcaggctatttaaagactttctaagaatat 346  Q
    ||||||||| | | |||||||||||||| |||| || ||||||||| |||| |||| ||||||||        ||||||||||| ||||| ||||||||     
T  29139876 tcctttcacaccagagcattctctagtcactaatctgaattattcaaaactatctt-cccttctag-------ggctatttaaatactttataagaataa 29139967  T
Q  347 ccgaagtaacaactctt-aacaaccccctaacaaacttat 385  Q
     | |||||||||||||| ||||||| ||||||||||||||    
T  29139968 tcaaagtaacaactcttcaacaaccacctaacaaacttat 29140007  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 388
Target Start/End: Original strand, 28721956 - 28722097
Alignment:
Q  247 tcctttcactctatagcattctctagtcgctaaacttaattattcataactgtctttcccttctaccctttcagg-ctatttaaagactttctaagaata 345  Q
    ||||||||| ||| ||||||||| || | ||||| ||||||||||| | || ||||||||| ||| |  |  ||| ||||||||||||||||||||||||    
T  28721956 tcctttcacactagagcattctcgaggcactaaatttaattattcaaagctatctttccct-ctatcaatcgaggactatttaaagactttctaagaata 28722054  T
Q  346 tccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
     || || ||||||||||||| || | ||||||| |||||||||    
T  28722055 accaaaataacaactcttaaaaatcacctaacatacttatcaa 28722097  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 45571587 - 45571653
Alignment:
Q  322 ctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatcaa 388  Q
    |||||||||||||| | ||||||| || || ||||||||||||| |||| |||||||||||||||||    
T  45571587 ctatttaaagacttcccaagaataaccaaaataacaactcttaagaaccacctaacaaacttatcaa 45571653  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 23247249 - 23247185
Alignment:
Q  322 ctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaacttatc 386  Q
    ||||||||||||||| |||||||| || || |||| || |||||||||| |||||||| ||||||    
T  23247249 ctatttaaagactttttaagaataaccaaaataactacccttaacaaccacctaacaagcttatc 23247185  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 8482110 - 8482028
Alignment:
Q  299 tctttcccttctaccctttcaggc-tatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaa 380  Q
    |||||||||||||||  || |||  ||||||||||||||||| |||||||| || |||||| ||||||||||| |||||||||    
T  8482110 tctttcccttctaccaattgaggggtatttaaagactttctatgaatatccaaaataacaaatcttaacaaccacctaacaaa 8482028  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 32251250 - 32251314
Alignment:
Q  320 ggctatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaactta 384  Q
    ||||||||||||||||||||| |||| || || |||||||||||||||  | ||||| |||||||    
T  32251250 ggctatttaaagactttctaacaataaccaaaataacaactcttaacagtcacctaaaaaactta 32251314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 8472917 - 8472863
Alignment:
Q  323 tatttaaagactttctaagaatatccgaagtaacaactcttaacaaccccctaacaaa 380  Q
    ||||||||||||||||||||||| || ||   |||||||||||||||| |||||||||    
T  8472917 tatttaaagactttctaagaataaccaaa---acaactcttaacaaccacctaacaaa 8472863  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 11341426 - 11341386
Alignment:
Q  356 caactcttaacaaccccctaacaaacttatcaattttctaa 396  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  11341426 caactcttaacaaccacgtaacaaacttatcaatttactaa 11341386  T

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