View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8503_low_21 (Length: 436)

Name: NF8503_low_21
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8503_low_21
NF8503_low_21
[»] chr8 (3 HSPs)
chr8 (320-418)||(43130471-43130570)
chr8 (40-110)||(8004785-8004855)
chr8 (40-108)||(16424669-16424737)
[»] chr7 (1 HSPs)
chr7 (320-418)||(26772105-26772204)
[»] scaffold0271 (1 HSPs)
scaffold0271 (320-396)||(16283-16359)
[»] chr1 (4 HSPs)
chr1 (320-385)||(20239440-20239505)
chr1 (40-109)||(5197580-5197649)
chr1 (343-418)||(31888317-31888393)
chr1 (63-104)||(34345270-34345311)
[»] chr6 (1 HSPs)
chr6 (41-109)||(1176599-1176667)
[»] chr5 (1 HSPs)
chr5 (1-44)||(27038958-27039001)
[»] chr4 (2 HSPs)
chr4 (71-109)||(55038417-55038455)
chr4 (63-104)||(2922073-2922114)
[»] chr2 (2 HSPs)
chr2 (63-104)||(25323680-25323721)
chr2 (63-104)||(25331848-25331889)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 43130570 - 43130471
Alignment:
Q  320 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcactatttcaaagtatcaaaaacaaatat-ttttacacaatcttactgattca 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||| |||| |||||||||| |||||||    
T  43130570 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcactgctactaagtatcaaaaacaaatatttttttcacaatcttattgattca 43130471  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 8004855 - 8004785
Alignment:
Q  40 gagtggtgataggtacacacacataggtggcataccactcctctaccacccttatgtggcattttatttta 110  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8004855 gagtgatgataggtaaacacccataggtggcataccactcctctaccacccttatgtggcattttatttta 8004785  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 16424669 - 16424737
Alignment:
Q  40 gagtggtgataggtacacacacataggtggcataccactcctctaccacccttatgtggcattttattt 108  Q
    |||| |||||||| | |||| ||||| | |||||||||||||| ||||| |||||||||||||||||||    
T  16424669 gagtagtgataggcatacacccatagatagcataccactcctccaccactcttatgtggcattttattt 16424737  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 26772204 - 26772105
Alignment:
Q  320 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcactatttcaaagtatcaaaaacaaatat-ttttacacaatcttactgattca 418  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||| |||| ||||||||||||||||||    
T  26772204 ttcccacaaattatgtcttgttcatctcaaatttcaatttcacaaatcactgctactaagtatcaaaaacaaatattttttccacaatcttactgattca 26772105  T

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Target: scaffold0271 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 16283 - 16359
Alignment:
Q  320 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcactatttcaaagtatcaaaaacaaatatt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||    
T  16283 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcaccgctacaaagtatcaaaaacaaatatt 16359  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 20239505 - 20239440
Alignment:
Q  320 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcactatttcaaagtatcaa 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  20239505 ttcccacaaattgtgtcttgttcatctcaaatttcaatttcacaaatcactgctacaaagtatcaa 20239440  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 5197649 - 5197580
Alignment:
Q  40 gagtggtgataggtacacacacataggtggcataccactcctctaccacccttatgtggcattttatttt 109  Q
    ||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  5197649 gagtgatgataggtaaacactcataggtggcataccactcctttaccacccttatgtgacattttttttt 5197580  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 31888317 - 31888393
Alignment:
Q  343 atctcaaatttcaatttcacaaatcactatttcaaagtatcaaaaacaaatattt-ttacacaatcttactgattca 418  Q
    |||||||||||||||  |||||||||||| | ||| |||||||||||||  |||| || ||||||||||||||||||    
T  31888317 atctcaaatttcaatgccacaaatcactactacaaggtatcaaaaacaataatttcttccacaatcttactgattca 31888393  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34345270 - 34345311
Alignment:
Q  63 taggtggcataccactcctctaccacccttatgtggcatttt 104  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  34345270 taggtggcataccactcccataccacccttgtgtggcatttt 34345311  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 1176667 - 1176599
Alignment:
Q  41 agtggtgataggtacacacacataggtggcataccactcctctaccacccttatgtggcattttatttt 109  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1176667 agtgatgataggtaaacacccataggtggcataccactcctctaccacccttatgtggcattttttttt 1176599  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27038958 - 27039001
Alignment:
Q  1 ctctatgttgggaagcaagcttcaagaaagttacttgctgagtg 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27038958 ctctatgttgggaagcaagcttcaagaaagttacttgctgagtg 27039001  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 55038417 - 55038455
Alignment:
Q  71 ataccactcctctaccacccttatgtggcattttatttt 109  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55038417 ataccactcctctaccacccttatgtggcattttatttt 55038455  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 2922073 - 2922114
Alignment:
Q  63 taggtggcataccactcctctaccacccttatgtggcatttt 104  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  2922073 taggtggcataccactcccataccacccttgtgtggcatttt 2922114  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 25323680 - 25323721
Alignment:
Q  63 taggtggcataccactcctctaccacccttatgtggcatttt 104  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  25323680 taggtggcataccactcccataccacccttgtgtggcatttt 25323721  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 25331889 - 25331848
Alignment:
Q  63 taggtggcataccactcctctaccacccttatgtggcatttt 104  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  25331889 taggtggcataccactcccataccacccttgtgtggcatttt 25331848  T

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