View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_23 (Length: 418)
Name: NF8503_low_23
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 10596529 - 10596887
Alignment:
| Q |
1 |
tgccaaagagaatgtgacnnnnnnngactctaactcgatgagtaaacgacaatcaacatctccgcctaagggatccaagttacctcctgtttgtctgaga |
100 |
Q |
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| T |
10596529 |
tgccaaagagaatgtgacaaaaaaagactctaactcgatgagtaaacgacgaccaacatctccgcctaagggatccaagttacctcctgtttgtctgaga |
10596628 |
T |
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| Q |
101 |
gttgatccattgccaaggaagaaaaatggaaatggaagttcaaggtctccaagtccacctgcttcaaaagaacactcgaaagcaacatctgttgaatcaa |
200 |
Q |
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| T |
10596629 |
gttgatccattgccaaggaagaaaaatggaaatgggagttcaaggtctccaagtccacctgcttcaaaagaacacttgaaagcaacatcttttggatcaa |
10596728 |
T |
|
| Q |
201 |
agaacattcctttgagagacatcaaagacaggattgaaccaaattcaaatggtaagagtgcatcaaaggctagtaaagagttaacaccagaggtgaaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| | ||| | |||||||| ||||||| |
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| T |
10596729 |
agaacattcctttgagagacatcaaagacaggactgaaccaaattcagatagtaagagtgcaccaaaggctagtgaggaggttgcaccagagatgaaaac |
10596828 |
T |
|
| Q |
301 |
tattcaagtgtgccaaaataagacaaatgataagaataaagagaaaggcacggaaaata |
359 |
Q |
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|| ||||| ||||||||| ||||||||||||||||| |||||||||| ||||||||| |
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| T |
10596829 |
tactcaagcgtgccaaaacaagacaaatgataagaaggaagagaaaggggcggaaaata |
10596887 |
T |
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