View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_24 (Length: 415)
Name: NF8503_low_24
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_24 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 10510671 - 10511026
Alignment:
| Q |
5 |
agaaaccatggcaagatcacccgagagcatcgcaaataggaaggaaccttgggacacagacaagcatacgtccgaacccatagtgatccgacaaattcct |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10510671 |
agaaaccatggcaagatcacccgagagcatcgcaaataggaaggaaccgtgggacgcagacaagcatacgtccggacccatagtgatccgacaaattcct |
10510770 |
T |
|
| Q |
105 |
ccataaatcatcatcctctacagcaaaggacaagttatattgaccacatcctaaaaggtgcaaggggtgaccagaggttttaccagaaaaccgttagagc |
204 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
10510771 |
ccataaatcactatcctctacagcaaaggacaagttatattgaccacatcctaaaaggtgcaaggggtgaccagaggttttaccaggaaactgttagagc |
10510870 |
T |
|
| Q |
205 |
atctcaaccgctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactac |
304 |
Q |
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| T |
10510871 |
atctcaaccgctagaacaatgttgatgttctcaagtta----atttttgtgggccaataattgccacatagaattcaagaactttcctcattttcactac |
10510966 |
T |
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| Q |
305 |
aatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10510967 |
aatgcatttaagttcttaatttgttttatatggggtccaccatgaacttcacatattata |
10511026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 204 - 364
Target Start/End: Original strand, 8436267 - 8436424
Alignment:
| Q |
204 |
catctcaaccgctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttc-tcattttcact |
302 |
Q |
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| T |
8436267 |
catctccaccgctagaacaatgttgatgttctcaagttaattt----ttgtaggccaataattgccacataggattcaagatcactccctcattttcact |
8436362 |
T |
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| Q |
303 |
acaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
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| T |
8436363 |
acaatgcatttaagttcttaatttgttttatatggggtctaccataaacttcacatagtata |
8436424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 13430869 - 13430806
Alignment:
| Q |
301 |
ctacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
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| T |
13430869 |
ctacaatgcatttaagttcttaatttgttttatatggggtccaccatgaacttcacatattata |
13430806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 25001362 - 25001287
Alignment:
| Q |
247 |
atttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactacaatgcatttaagttctta |
322 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| ||| ||||||||| |
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| T |
25001362 |
atttttttgggccaataattaccacatagaattcaagaattttcatcattttgactgcaatgtattcaagttctta |
25001287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 25001270 - 25001223
Alignment:
| Q |
317 |
ttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
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| T |
25001270 |
ttcttagtttgttttatatgaggtccaccatgaacttcacatattata |
25001223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 198 - 364
Target Start/End: Complemental strand, 43377367 - 43377205
Alignment:
| Q |
198 |
ttagagcatctcaaccgctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttctcattt |
297 |
Q |
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|
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||| ||||||| |
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| T |
43377367 |
ttagagcatctccgctcctagaacaatgttgatgttctcaagttaattt----ttgtgggccaataattgccacataggatttaagaactttcctcattt |
43377272 |
T |
|
| Q |
298 |
tcactacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
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| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43377271 |
ttgctacaatgcatctaagttcttaatttattttatatggggtccaccatgaactttccatattata |
43377205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 48757282 - 48757140
Alignment:
| Q |
214 |
gctagaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttct-cattttcactacaatgcatt |
312 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
48757282 |
gctagaataatgttgatgttctcatgttaattt----ttgtgggccaataattgctacataggattcaagaacacttcttcattttcactacaattcatt |
48757187 |
T |
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| Q |
313 |
taagttcttaatttattttatatggggtccaccatgaacttcacata |
359 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
48757186 |
taagttcttaatttgttttatatgcggtccaccatgaacttcacata |
48757140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 247 - 364
Target Start/End: Original strand, 152905 - 153022
Alignment:
| Q |
247 |
atttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactacaatgcatttaagttcttaatttattttatatggggtccacca |
346 |
Q |
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||||||||||||||| |||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
152905 |
atttttgtgggccaacaattgccatataggattcaagaactttcctcattttcactacaatgcatttaagttcttaatttgttttatatggggtccacca |
153004 |
T |
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| Q |
347 |
tgaacttcacatattata |
364 |
Q |
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|||||||||||||||||| |
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| T |
153005 |
tgaacttcacatattata |
153022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 10227658 - 10227514
Alignment:
| Q |
217 |
agaacaatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattc-aagaatttttctcattttcactacaatgcatttaa |
315 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||| |||||||||||| |
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| T |
10227658 |
agaacaatattgatgttctcaatgta----atttttgtgggccaataattgccacatagaactctaagaactttcatcattttcactgcaatgcatttaa |
10227563 |
T |
|
| Q |
316 |
gttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10227562 |
gttcttagtttgttttatatggggtccaccatgaacttcacatattata |
10227514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 43974831 - 43974978
Alignment:
| Q |
214 |
gctagaacaatgtt-gatgttctcaagttaatttatttttgtgggccaataattgccaca--tagaattcaagaatttttc-tcattttcactacaat-g |
308 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||||||||| ||||| ||||| ||| ||| ||||| | | |||||||||||||||| | |
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| T |
43974831 |
gctagaacaatgtttgatattctcaagttaattt----ttgtgggccactaattaccacacataggatttaagaacactccctcattttcactacaattg |
43974926 |
T |
|
| Q |
309 |
catttaagttcttaatttattttatatggggtccaccatgaacttcacatat |
360 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
43974927 |
catttaagttcttaatttgttttatacggcgtccaccatgaacttcacatat |
43974978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 33493464 - 33493554
Alignment:
| Q |
221 |
caatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttc-tcattttcactacaatgcattta |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||| | | |||||||||||||||| |||||| |
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|
| T |
33493464 |
caatgttgatgttctcaagtta----atttttgtgggccattaattgccacttaggattgaagaacaatccatcattttcactacaatacattta |
33493554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 42654199 - 42654104
Alignment:
| Q |
269 |
cacatagaattcaagaatttttctcattttcactacaatgcatttaagttcttaatttattttatatggggtccaccatgaacttcacatattata |
364 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||| |||||||||| || ||| |||||||||| |||||||| |||||||||||||||| |
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| T |
42654199 |
cacatagaattcaagaacttttatcatttttactacaatacatttaagtttgtagtttgatttatatgggatccaccataaacttcacatattata |
42654104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 40701215 - 40701305
Alignment:
| Q |
222 |
aatgttgatgttctcaagttaatttatttttgtgggccaataattgccacatagaattcaagaatttttctcattttcactacaatgcatttaag |
316 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||| || ||| ||||||||||||| |||||||||||| |
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| T |
40701215 |
aatgttaatgttctcaagttaattt----ttgtgggccaataattaccacataggattcaaaaactttcctcattttcactaaaatgcatttaag |
40701305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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