View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_26 (Length: 408)
Name: NF8503_low_26
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 38122213 - 38121838
Alignment:
| Q |
12 |
atgaatagtagtggtactagtggacaataaaaagcttgctataatcaccaagaagaaactatgcactaatattgtctaatagtgaaattaatgctatagc |
111 |
Q |
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| T |
38122213 |
atgaatagtagtggtactagtagacaataaaaagcttgctataatcactaagaagaaactatgcactaatattgtctaatagtgaaattaatgctatagc |
38122114 |
T |
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| Q |
112 |
gaccaaacatgtttgacgatttttaaaatgtacaagcatttctaactccaaaattaatacctcaattggcttttgcttctaaggatcactaagcctctca |
211 |
Q |
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| T |
38122113 |
gaccaaacatgtttgacgatttttaaaatgtacaagcatttctaactccaaaattaatacctcaattggcttttgcttctaaggatcactaagcctctca |
38122014 |
T |
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| Q |
212 |
gctccacaagtcaataacggtttcactgttgaaatagagagaataggaatggtaattaatgtttctgaatccaaattttccactaattaggtttgaacat |
311 |
Q |
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| T |
38122013 |
gctccacaagtcaataacggtttcactgttgaaatagagagaataggactgg----taatgtttctgaatccaaattttccactaattaggtttgaacat |
38121918 |
T |
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| Q |
312 |
tgaagttcaaattaaagcttgattcaaaatcaatggaagttgcaccgttgcatcaagggataagactagatgccttagtt |
391 |
Q |
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| T |
38121917 |
tgaagttcaaattaaagcttgattcaaaatcaatggaagttgcaccgttgcatcaagggataagactagatgccttagtt |
38121838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 4620979 - 4620836
Alignment:
| Q |
106 |
tatagcgaccaaacatgtttgacgatttttaaaatgtacaagcatttctaactccaaaattaatacctcaattggcttttgcttctaaggatcactaagc |
205 |
Q |
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| T |
4620979 |
tatagccaccaaacatgcttaacc-ttttaaaattgtaaaaccattttttactacagaatgaatacctcaattggattttgcatctaaggatcaataaac |
4620881 |
T |
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| Q |
206 |
ctctcagctccacaagtcaataacggtttcactgttgaaatagag |
250 |
Q |
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| T |
4620880 |
ctctcagctccacaagtcaataactgtttcactgttgcaatagag |
4620836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 4620774 - 4620699
Alignment:
| Q |
277 |
tgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgca |
355 |
Q |
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||||||||||| |||||| || ||||||||| ||||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
4620774 |
tgaatccaaatcttccaccaa---ggtttgaactttgaagttccaattaaagctcaattcaaaatcaatgaaagttgca |
4620699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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