View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_3 (Length: 722)
Name: NF8503_low_3
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 326 - 605
Target Start/End: Complemental strand, 12601309 - 12601032
Alignment:
| Q |
326 |
tcgcagcgccatcatccttctcaagtcgcagcaccatcgtccttcttgcatcttatcattttctcgacgtcgtctgatatgccttgtcctcaactcggca |
425 |
Q |
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| T |
12601309 |
tcgcagcgccatcatccttctcaagtcgcagcaccatcgtccttcttgcatcttatcattttctcgacgtcgtctgatatgccttgtcctcaactcgaca |
12601210 |
T |
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| Q |
426 |
tagtcccaaagcggcgcgtcatcctccctctaaaaatgtcacaagtggatgaagatggtttcagaacttaacacatgaatggtatagccatgatcataaa |
525 |
Q |
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| T |
12601209 |
tagtcccaaagcggcgcgccatcctccctctaaaaatgtcacaagtggatgaagatggtttcagaacttaacacatgaatggtatagtcatgatcataaa |
12601110 |
T |
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| Q |
526 |
caataaacataataacacttctatgacagnnnnnnnntatatagatatcagttatttaatttaatatattttaacataac |
605 |
Q |
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| T |
12601109 |
caataaacataataacacttctatgacag--aaaaaatatatagatatcagttatttaatttaatatattttaatataac |
12601032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 12601674 - 12601581
Alignment:
| Q |
20 |
gtggaaacccattaatctatcctcaaatgatccttatttatatcatttgtactttgctaatgatataaccttatctgctgatgcaatcatggta |
113 |
Q |
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| T |
12601674 |
gtggaaacccattaatctatcctcaaatgatccttatttatatcatttgtactttgcgaatgatgtaaccttatctgctgatgcaatcatggta |
12601581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 564 - 687
Target Start/End: Complemental strand, 12243484 - 12243363
Alignment:
| Q |
564 |
atatagatatcagttatttaatttaatatattttaacataacctcccacttagcaatcattgttcccctaagataaggaggatctccaaatactgcagag |
663 |
Q |
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| T |
12243484 |
atatagacatcggttatttaatttaatatattttaacataatttccccctc-gcagtcattgttcccctaagataag-aggaacttcaaatactgctgag |
12243387 |
T |
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| Q |
664 |
taataaactaaagattcaacaagg |
687 |
Q |
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| T |
12243386 |
taataaactaaagattcaacaagg |
12243363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 648 - 687
Target Start/End: Complemental strand, 12601030 - 12600991
Alignment:
| Q |
648 |
tccaaatactgcagagtaataaactaaagattcaacaagg |
687 |
Q |
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| T |
12601030 |
tccaaatactgcagagtaataaactaaagattcaacaagg |
12600991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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