View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_30 (Length: 398)
Name: NF8503_low_30
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 43327167 - 43327552
Alignment:
| Q |
1 |
caacaagtcaaccaccaccaaacatacatcatcaagattttgattttga------agaaactcttcaaaatggtttggcattatactctccatggatgat |
94 |
Q |
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| T |
43327167 |
caacaagtcaaccacaaccaaacatacatcatcaagattttgattttgattttgaagaaactcttcaaaatggtttggcattatactctccatggatgat |
43327266 |
T |
|
| Q |
95 |
tcaatggcaaagaaatctggtgttgtactgtcctcttccatcccatctgccaaagcaacccacttgatgatgatcttattnnnnnnnnnnnnnnnnntat |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |
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| T |
43327267 |
tcaatggcaaagaaatctggtgttgtactgtcctcttccatcccatctgccaaagcaacccacttgatgat---cctatcatcatcatcatcatcattat |
43327363 |
T |
|
| Q |
195 |
tattaatcttcttatgaacatgttgagggagaactatcacggcttcaaatccttggcttacaaagacagaagctagattttgcatgggactaacatgtcc |
294 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43327364 |
tattaatcttcttatgaacatgttgagggaggactatcacggcttcaaatccttggcttacaaagacagaagctagattttgcatgggactaacatgtcc |
43327463 |
T |
|
| Q |
295 |
ttgtgcgggatagggaacaaaaacgattattggcttcttcatgttcataattaattagttacgttggttactttccaattcttctaagcaacac |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43327464 |
ttgtgcgggatagggaacaaaaacgattattggcttcttcatgttcataattaatta-----gttggttactttccaattcttctaagcaacac |
43327552 |
T |
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