View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_low_33 (Length: 382)
Name: NF8503_low_33
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 47638431 - 47638779
Alignment:
| Q |
19 |
catcacttatcatccacctgattctaaccagtggaagattaaattgcataacaaaagaaaggtgtatcacctgttactatttctctcaattcacaatact |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47638431 |
catcactcatcatccacctgattctaaccagtggaagattaaattgcataacaaaagaaaggtgtatcacctgttactatttctctcaattcacaatact |
47638530 |
T |
|
| Q |
119 |
atcttttcatctcaaaatgtatatcatcaattcctcaacaacaacacaattgattct---tcttcttcttctagcatcctttttaacttcactcgccttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
47638531 |
atcttttcatctcaaaatgtatatcatcaattcctcaacaacaacacaattgattcttcttcttcttcttcttgcatccttgttaacttcactcaccttt |
47638630 |
T |
|
| Q |
216 |
tcattatcagtatctccaatatacaactaccatgcttgcaccgacacctcatattaccaaccaaattcaaatttccaaacaactttaaaaacccttctct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47638631 |
tcattatcagtatctccaatatacaactcccatgcttgcaccgacacctcatattaccaaccaaattcaaatttccaaacaactttaaaaacccttctct |
47638730 |
T |
|
| Q |
316 |
cttcacttgtcaacaccaccatacacaacactttctacaccttccacat |
364 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47638731 |
cttcactcgtcaacaccaccatacacaacactttctacacctcccacat |
47638779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University