View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_34 (Length: 376)
Name: NF8503_low_34
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 45 - 324
Target Start/End: Original strand, 55690346 - 55690625
Alignment:
| Q |
45 |
aattgctgtgaaagtcgcttcccttatgggagttatcccctcttatttttgaaggcctttgtctgtctggaggattcattttttctgtttgtcaaacaac |
144 |
Q |
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| T |
55690346 |
aattgctgtgaaagtcgcttccctcatggaagttatcccctctcatttttgaaggcctttgtctgtctggag-attcattttttctgtttgtcaaacaac |
55690444 |
T |
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| Q |
145 |
attcaatgaaagagaaagtttatatattttgtaaatattgagactaaaattctgaaaatgcaaatgggttcttgggttcttttagaaatgagtattaggg |
244 |
Q |
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| T |
55690445 |
attcaatgaaagagaaagtttatatatttcgtaaatattgaaactaaaattctgaaaatgcaaatgggttcttgggttcttttagaaatgagtattaggg |
55690544 |
T |
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| Q |
245 |
tgttactatttccaaaatatgtg-ttgacgagtgtgaatacatgagacctggaaacatcagaatttggaatttacaagaga |
324 |
Q |
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| T |
55690545 |
ttttactgtttccaaaatatgtgattgatgagtgtgaatacatgagacctggaaacatcagaatttggaatttacaagaga |
55690625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 55690685 - 55690717
Alignment:
| Q |
327 |
attatattataatgaaagttcatgaattatgac |
359 |
Q |
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| T |
55690685 |
attatattataatgaaagttcatgaattatgac |
55690717 |
T |
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