View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_35 (Length: 367)
Name: NF8503_low_35
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 42161818 - 42162161
Alignment:
| Q |
11 |
agaaagattaaggagagacccactaagcagatatccagaaaaatgtccaccaaatggaaacgacgccgtagtaatatatacaacgtcgttaagaggtgta |
110 |
Q |
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| T |
42161818 |
agaaagattaaggagagacccactaagcagatatccagaaaaatgtccaccaaatggaaacgacgccgtagtaatatatacaacgtcgttaagaggtgta |
42161917 |
T |
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| Q |
111 |
agaaagacgtttgataattgcaaccaagcaagagacttattggagaatcatagggttgtatttgatgaacgtgacgtggcacttcatggagagtttttaa |
210 |
Q |
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| T |
42161918 |
agaaagacgtttgataattgcaaccaagcaagagacttattggagaatcatagggttgtatttgatgaacgtgacgtggcacttcatggagagtttttaa |
42162017 |
T |
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| Q |
211 |
aggaagtgaaggagttgttattaacggaggaagagttaggggttggtgtggttttgccaagggtgtttgtgaagggtaggtatttgggtgggttggatga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162018 |
aggaagtgaaggagttgttattaacggaggaagagttaggggttggtgtggttttgccaagggtgtttgtgaagggtaggtatttgggtgggttggatga |
42162117 |
T |
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| Q |
311 |
gttgatggagcttaatgaaacgggtcgacttgggaggatactga |
354 |
Q |
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| T |
42162118 |
gttgatggagcttaatgaaacgggtcgacttgggaggatactga |
42162161 |
T |
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