View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_36 (Length: 361)
Name: NF8503_low_36
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_36 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 48883363 - 48883700
Alignment:
| Q |
19 |
agatcaccgaaggaatcgaaagcgctttgaagacccgaattgatgaattgattgtacgagttgatttggtgactgattaaaccgtattggtcgaagaaca |
118 |
Q |
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| T |
48883363 |
agatcaccgaaggaatcgaaagcgctttgaagacccgaattgatgaattgattgtacgagttgatttggtgactgattaaaccgtattggtcgaagaaca |
48883462 |
T |
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| Q |
119 |
taacggaagctttcttgcaaaagtatttgaccatatcgtcgccgagttcgttgaggatttcggcgttggattgatcttcatcgtcgtcaaggtcaatgtc |
218 |
Q |
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| T |
48883463 |
taacggaagctttcttgcaaaagtatttgaccatatcgtcgccgagttcgttgaggatttcggcgttggattgatcttcatcgtcgtcaaggtcaatgtc |
48883562 |
T |
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| Q |
219 |
catttctgtgtagttggtgttgttagcatctttgcttgaacctatgtgttccattgtggttgagaaatgaaaaattagggtttatggagaaagggttttg |
318 |
Q |
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| T |
48883563 |
catttctgtgtagttggtgttgttagcatctttgcttgaacctatgtgttccattgtggttgagaaatgaaaaattagggtttatggagaaagggttttg |
48883662 |
T |
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| Q |
319 |
gtacaatttgccccttctcgcttaagcttcttctcact |
356 |
Q |
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| T |
48883663 |
gtacaatttgccccttctcgcttaagcttcttctcact |
48883700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 53014635 - 53014834
Alignment:
| Q |
28 |
aaggaatcgaaagcgctttgaagacccgaattgatgaattgattgtacgagttgatttggtgactgattaaaccgtattggtcgaagaacataacggaag |
127 |
Q |
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| T |
53014635 |
aaggaattgaaagcattttgaagaccagaagtgatgaattaattataggaattgatttggtgactgattaaaccgtactcgttgaagaacacgatggaag |
53014734 |
T |
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| Q |
128 |
ctttcttgcaaaagtatttgaccatatcgtcgccgagttcgttgaggatttcggcgttgga---ttgatcttcatcgtcgtcaaggtcaatgtccatttc |
224 |
Q |
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| T |
53014735 |
cttttttgcagaaatatttgaccatgtcttcacctagttcgttgaggatttcagcatttgatggtttttcttcatcgtcgtttaggtcaatgtccatttc |
53014834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 30325 - 30025
Alignment:
| Q |
19 |
agatcaccgaaggaatcgaaagcgctttgaagacccgaattgatgaattgattgtacgagttgatttggtgactgattaaaccgtattggtcgaagaaca |
118 |
Q |
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| T |
30325 |
agatcaccgaaggaatcaaaagcggattgaagaccagaagtgatgaattgattataggagttgatttggtgactgattaaaccgtattgatcgaagaaca |
30226 |
T |
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| Q |
119 |
taacggaagctttcttgcaaaagtatttgaccatatcgtcgccgagttcgttgaggatttcggcgttggattgatcttcatcgtcgtcaaggtcaatgtc |
218 |
Q |
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| T |
30225 |
tgacggaagctcttttgcaaaagtatttgaacatatcttcgccgagttcgttgaggatttcagcgttggatggatcttcatcgttg---aggtcgatgtc |
30129 |
T |
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| Q |
219 |
catttctgtgtagttggtgttgttagcatctttgcttgaacctatgtg---ttccattgtggttgagaaatgaaaaattagggtttatggagaaagggtt |
315 |
Q |
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| T |
30128 |
catttcagtgta------gatgttagcgtctttgcttgaacctatgtgatcctccat--tagtaaggagatggaaaattagggtttatggagaaaggatt |
30037 |
T |
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| Q |
316 |
ttggtacaattt |
327 |
Q |
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| T |
30036 |
ttggtacaattt |
30025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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