View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_37 (Length: 361)
Name: NF8503_low_37
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 10343578 - 10343902
Alignment:
| Q |
22 |
ccttgtgaaccttgactagaactatcccctataggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactagtac |
121 |
Q |
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| T |
10343578 |
ccttgcgaaccttgactagaactctctcatataggtgatatatatctcttgattgataagttatcatgccaatgataatccttcatagtacaactagtac |
10343677 |
T |
|
| Q |
122 |
tagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgttttatgcaccagcctcagtttgtcctgcaacaggtgca |
221 |
Q |
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| T |
10343678 |
tagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgtttcatgcaccaacttcagtttatcc-gcaacaggtgca |
10343776 |
T |
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| Q |
222 |
tgaaacaattatatatatagggact-aaatatagctcca----tactctcgatgtatatacaggaagacattgatcagtcacttcgcctaagtgttagtc |
316 |
Q |
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| T |
10343777 |
tgaaacatttatatatatatggactaaaatatagctccatatgtactctcgatgtatatacaggaagacattgatcagtcacttcacctaagtgatagtc |
10343876 |
T |
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| Q |
317 |
ttgtgcttgggggctgcggaccatca |
342 |
Q |
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| T |
10343877 |
tcatgcttgggggctgtggaccatca |
10343902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 10181223 - 10181092
Alignment:
| Q |
24 |
ttgtgaaccttgactagaactatcccctataggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactagtacta |
123 |
Q |
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| T |
10181223 |
ttgtgaatcttgactataactttctcctttaggtgatctacttctcttgattgataaattatcaggccactgatcatcattcatagtactactagtagta |
10181124 |
T |
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| Q |
124 |
gtagtagtggtggtgttaattccaccatctaa |
155 |
Q |
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| T |
10181123 |
ttattagtggtggtgttagttgcactatctaa |
10181092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 10182201 - 10182308
Alignment:
| Q |
78 |
taaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattac |
177 |
Q |
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|||||||||||||| | ||| ||||||||| | | |||| || || ||||||||||||||||||||| |||||||||| |||||| |||| ||||||| |
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| T |
10182201 |
taaattatcatgccgctaatattccttcatagtgctactactagtattagtagtggtggtgttaattctaccatctaaatacaaaatggaatgacattac |
10182300 |
T |
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| Q |
178 |
tattgttt |
185 |
Q |
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|||||||| |
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| T |
10182301 |
tattgttt |
10182308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 10343124 - 10343009
Alignment:
| Q |
23 |
cttgtgaaccttgactagaactatcccctataggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactagtact |
122 |
Q |
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||||||||| || |||| |||| || ||| || ||||||| ||||||| || ||||||||||||| || |||| || |||||| |||||||| |||| |
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| T |
10343124 |
cttgtgaacattaactataactctcacctctaagtgatctacttctcttaatcaataaattatcatgtcactgatcataattcatagtacaactactact |
10343025 |
T |
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| Q |
123 |
agtagtagtggtggtg |
138 |
Q |
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| T |
10343024 |
aatagtagtagtggtg |
10343009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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