View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_38 (Length: 358)
Name: NF8503_low_38
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 26643385 - 26643726
Alignment:
| Q |
1 |
tgcaaaaaggtatcaaaattcaatgggagtgtgtcctttttgcttttattatggtgttgtatttggttagaccagaaatccctggcttgaccttcaaagc |
100 |
Q |
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| T |
26643385 |
tgcaacaaggtgtcaaaattcaatgggagtgtgtcctttttgcttttattatggtgttgtatttggttagaccagaaatccctggcttgaccttcaaagc |
26643484 |
T |
|
| Q |
101 |
atcttttcttagattatgctatgtaattgtaatctgtttatagcttctatctttaactctttatgtgtgcgtgtgaaaggccatatagtgtgaagtaata |
200 |
Q |
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| T |
26643485 |
atcttttcttagattatgctatgtaattgtaatctgtttatagcttctatctttaactctttatgtgtgcctgtgaaaggccatatagtgtgaa-taata |
26643583 |
T |
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| Q |
201 |
---nnnnnnnnnaggtattatgcggagatattgtactaattgtcatattttcctccttagtgactaactttatggacatttacattttatctttaaggtt |
297 |
Q |
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| T |
26643584 |
ttttttttttttgggtattatgcggagatattgtactaattgtcatattttcctccttagtgactaactttatggacatttacattttatctttaaggtt |
26643683 |
T |
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| Q |
298 |
gattttcattttctatcaagaattgggtttgtgctttataaat |
340 |
Q |
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| T |
26643684 |
gactttcattttctatcaagaattgggtttgtgctttataaat |
26643726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 26656865 - 26656992
Alignment:
| Q |
29 |
gtgtgtcctttttgcttttattatggtgttgtatttggttagaccagaaa-tcc--ctggcttgaccttcaaagcatcttttcttagattatgctatgta |
125 |
Q |
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| T |
26656865 |
gtgtgtcctttatgcttttattatggtgttgtatttggttagacaagagtgtcctcctggcttgaccttgaaagcagcttttcttaaattttgccatgtc |
26656964 |
T |
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| Q |
126 |
attgtaatctgtttatagcttctatctt |
153 |
Q |
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| T |
26656965 |
atagtaatgtgtttatagcttctatctt |
26656992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 26657232 - 26657331
Alignment:
| Q |
211 |
ggtattatgcggagatattgtactaattgtcatattttcctccttagtgactaactttatggacatttacattttatctttaaggttgattttcattttc |
310 |
Q |
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||||||||| | | |||||||| ||||||||||||||||||||| | | ||| |||||||||||||| |||||| ||||||||||| ||||||| ||| |
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| T |
26657232 |
ggtattatgggaacatattgtaataattgtcatattttcctcctcaagggttaattttatggacatttatattttacctttaaggttg-ttttcatattc |
26657330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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