View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_39 (Length: 349)
Name: NF8503_low_39
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 41928634 - 41928965
Alignment:
| Q |
20 |
aaatggaactggatcaagatgaacagctttaacaaactcaaaacctttcagctacaaaaat----------catgatcagcataaagcttcaggagattt |
109 |
Q |
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| T |
41928634 |
aaatggaactggatcaagatgaacagctttaacaaactcaaaacctttcagctacaaaaatgaacaaaaatcatgatcagcataaagcttcaggagattt |
41928733 |
T |
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| Q |
110 |
accttatacatactta---tacttgcaattctgacaatcatgcaaaatgattttgatccatccaactattcaacttaagtaattatattaatattttaaa |
206 |
Q |
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| T |
41928734 |
accttatacatacttacgatacttgcaattctgacaatcatgcaaaatgattttgatccatccaactattcaactcaagtaattctattaatattttaaa |
41928833 |
T |
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| Q |
207 |
aaatttaaaacagatatgtgattaagtggttttaaatagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaatgtttcgcctttgaa |
306 |
Q |
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| T |
41928834 |
aaatttaaaacagatatgtgattaagtggttttaaatagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaatgtttcgcctttgaa |
41928933 |
T |
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| Q |
307 |
tcttcacagagagaattaaagtccatcttcat |
338 |
Q |
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| T |
41928934 |
tcttcacatagagaattaaagtccatcttcat |
41928965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 2218887 - 2218798
Alignment:
| Q |
243 |
tagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaatgtttcgcctttgaatcttcacagagagaattaaagtccat |
332 |
Q |
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| T |
2218887 |
tagaaccttcttttcctttccaatctttgagagctcttcaagtatgtaactttttgccctagaatctccacagagagaattaaagtccat |
2218798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 2205841 - 2205752
Alignment:
| Q |
242 |
atagaaccttcttttccttcgcaatctttaagagctctccaagtatgtaatgtttcgcctttgaatcttcacagagagaattaaagtcca |
331 |
Q |
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||||||||||||||||||| |||||||| ||||||| ||||||||||| ||| ||| | |||||| ||||||||||||| ||||||| |
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| T |
2205841 |
atagaaccttcttttcctttccaatctttgagagctcatcaagtatgtaaccttttgccctagaatctccacagagagaattgaagtcca |
2205752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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