View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_4 (Length: 633)
Name: NF8503_low_4
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 23939500 - 23938884
Alignment:
| Q |
1 |
tgtggtttatctgttgcctcccttgtgtgcagatgtaagtggttnnnnnnntgttcaataactcacactagttcttctattatatgtgtatttctatggt |
100 |
Q |
| |
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||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
23939500 |
tgtggtttatccgtttcctgccttgtgtgcagatgtaagtggttaaaaaaacgttcaataactcgcactagttcttctattatgtgtgtatttctatggt |
23939401 |
T |
|
| Q |
101 |
tcaaaagctctacattattttaacagtcaagttatgcttgatggtttactactaaaattttcgtaggcaactgaggttttgatcgagtatcgtttcactt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23939400 |
tcaaaagctctacattattttaacattcaagttatgcttgatggtttactactaaaattttcgtaggcaactgaggttttgatcgagtatcgtttcactt |
23939301 |
T |
|
| Q |
201 |
caatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagaccttacatatattctgtcttttcatttgatatattctgcacattaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23939300 |
caatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagacaatacatatattctgtcttttcatttgatatattctgcacattta |
23939201 |
T |
|
| Q |
301 |
tctcaggtatggagaaatggctaacaaatacaatgtggaaccaatattatcagataagctttataatttggtggaaactggactcagaatatgccaggca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23939200 |
tctcaggtatggagaaatggctaacaaatacaatgtggaaccaatattatcagataagctttataatttggtggaaactggactcagaatatgccaggca |
23939101 |
T |
|
| Q |
401 |
atattaattaattctctaagaaaaagaatcatataagtgatgttgattctgtttgtccactcttaacaaggtagaca-ttatttctaagtaatctactat |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||| |
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| T |
23939100 |
gtattaattaattctctaagaaaaagaatcatataagtgatgttgattctgtttgtcccctcttaacagggtagacatttttttctaagtaatctactat |
23939001 |
T |
|
| Q |
500 |
tctagtatcaattcactgtctcctcttaagcttcaattttaaatataagtttgtcgataagtctattagtataaagtaatatatgataccaatgaaattt |
599 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23939000 |
tctagtatcaattcactatctcctcttaagcttcatttttaaatataagtttgtcgataagtctattagtataaagtaatatatgataccaataaaattt |
23938901 |
T |
|
| Q |
600 |
ctatcaataatttatat |
616 |
Q |
| |
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||||||||||||||||| |
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| T |
23938900 |
ctatcaataatttatat |
23938884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 156 - 307
Target Start/End: Complemental strand, 24003529 - 24003378
Alignment:
| Q |
156 |
aattttcgtaggcaactgaggttttgatcgagtatcgtttcacttcaatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagac |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||| ||||| || |||||||||||| |||||||| |
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| T |
24003529 |
aattttcgtaggcaactgaggttttga-cgagtatcgtttcacttcaatcgcaagaatttcaaactgta-ttaacaatgcaaggtcatttcaggttagac |
24003432 |
T |
|
| Q |
256 |
cttacatatattc--tgtcttttcatttgatatattctgcacattaatctcagg |
307 |
Q |
| |
|
||||||||||| ||| | |||||||| ||| |||||||||||||||||||| |
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| T |
24003431 |
aatacatatattctttgtttgttcatttggtatgttctgcacattaatctcagg |
24003378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 468 - 616
Target Start/End: Complemental strand, 24003193 - 24003045
Alignment:
| Q |
468 |
aaggtagacattatttctaagtaatctactattctagtatcaattcactgtctcctcttaagcttcaattttaaatataagtttgtcgataagtctatta |
567 |
Q |
| |
|
|||||||| ||| |||||||| |||||| ||| ||| ||| |||| |||| |||||| ||||| |||||||||| |||||||| |||| |||||| | |
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| T |
24003193 |
aaggtagaaattttttctaagcaatctaatatactaatataaatttgttgtcctctcttatgcttccattttaaatacaagtttgttgatatgtctataa |
24003094 |
T |
|
| Q |
568 |
gtataaagtaatatatgataccaatgaaatttctatcaataatttatat |
616 |
Q |
| |
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|||| |||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
24003093 |
gtatcgagtaatatattatgccaatcaaatttctatcaataatttatat |
24003045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 24003733 - 24003638
Alignment:
| Q |
53 |
gttcaataactcacactagttcttctattatatgtgtatttctatggttcaaaagctctacattattttaacagtcaagttatgcttgatggttta |
148 |
Q |
| |
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|||||||||||||||||| ||||||| |||| |||| ||| | | ||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
24003733 |
gttcaataactcacactatttcttcttttatgagtgtgtttttgttgttcaaaagctctgcattattttaacattcaagttatgtttgatggttta |
24003638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 24003328 - 24003287
Alignment:
| Q |
355 |
taagctttataatttggtggaaactggactcagaatatgcca |
396 |
Q |
| |
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||||| || |||||||||| |||||||||||||||||||||| |
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| T |
24003328 |
taagccttgtaatttggtgaaaactggactcagaatatgcca |
24003287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 3576798 - 3576750
Alignment:
| Q |
99 |
gttcaaaagctctacattattttaacagtcaagttatgcttgatggttt |
147 |
Q |
| |
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||||||||||| ||||||| ||||||| ||||||||||||||| |||| |
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| T |
3576798 |
gttcaaaagctttacattagtttaacaaccaagttatgcttgattgttt |
3576750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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