View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8503_low_42 (Length: 338)

Name: NF8503_low_42
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8503_low_42
NF8503_low_42
[»] chr3 (22 HSPs)
chr3 (16-320)||(34060105-34060400)
chr3 (106-196)||(33689175-33689265)
chr3 (110-196)||(51046122-51046208)
chr3 (110-196)||(30734451-30734537)
chr3 (106-196)||(55223231-55223321)
chr3 (105-196)||(47492096-47492187)
chr3 (110-195)||(41752967-41753052)
chr3 (133-196)||(29031763-29031826)
chr3 (110-169)||(30580759-30580818)
chr3 (110-192)||(43139762-43139844)
chr3 (111-169)||(51046077-51046135)
chr3 (111-196)||(30580805-30580890)
chr3 (110-158)||(45103112-45103160)
chr3 (113-196)||(18321657-18321740)
chr3 (133-196)||(47677304-47677367)
chr3 (134-196)||(30476523-30476585)
chr3 (133-224)||(49418704-49418803)
chr3 (111-187)||(50524706-50524782)
chr3 (133-195)||(1801496-1801558)
chr3 (110-156)||(50524791-50524837)
chr3 (110-155)||(1801449-1801494)
chr3 (133-169)||(49418717-49418753)
[»] chr1 (28 HSPs)
chr1 (110-225)||(36290427-36290542)
chr1 (110-196)||(29179646-29179732)
chr1 (110-187)||(48498418-48498495)
chr1 (106-197)||(9157309-9157400)
chr1 (110-196)||(1091593-1091679)
chr1 (110-196)||(32540797-32540883)
chr1 (110-196)||(37155049-37155135)
chr1 (110-196)||(48993966-48994052)
chr1 (110-195)||(5995372-5995457)
chr1 (110-195)||(44706834-44706919)
chr1 (133-196)||(47303421-47303484)
chr1 (106-196)||(4608995-4609085)
chr1 (133-192)||(5694942-5695001)
chr1 (133-196)||(29371394-29371457)
chr1 (110-196)||(17127613-17127699)
chr1 (114-192)||(45728294-45728372)
chr1 (110-183)||(21630045-21630118)
chr1 (113-158)||(33219660-33219705)
chr1 (110-171)||(46932000-46932061)
chr1 (110-150)||(15220906-15220946)
chr1 (133-196)||(38674554-38674615)
chr1 (133-196)||(741551-741614)
chr1 (145-196)||(8337900-8337951)
chr1 (113-154)||(2573236-2573277)
chr1 (110-155)||(5995459-5995504)
chr1 (168-224)||(7788269-7788325)
chr1 (106-158)||(29371455-29371507)
chr1 (110-158)||(48993920-48993968)
[»] chr5 (22 HSPs)
chr5 (111-196)||(30117877-30117962)
chr5 (111-210)||(39031186-39031285)
chr5 (110-196)||(19655161-19655247)
chr5 (106-196)||(3180109-3180198)
chr5 (106-158)||(12913890-12913942)
chr5 (110-196)||(291100-291186)
chr5 (115-196)||(16439146-16439227)
chr5 (106-192)||(12913802-12913888)
chr5 (110-192)||(19598335-19598417)
chr5 (106-150)||(2356366-2356410)
chr5 (133-196)||(28818943-28819006)
chr5 (121-196)||(29699381-29699456)
chr5 (110-158)||(2953277-2953325)
chr5 (110-158)||(28819004-28819052)
chr5 (110-169)||(291173-291232)
chr5 (133-196)||(16802470-16802533)
chr5 (121-150)||(7009423-7009452)
chr5 (110-158)||(2093940-2093988)
chr5 (110-158)||(16971231-16971279)
chr5 (110-158)||(29699454-29699502)
chr5 (110-158)||(30117831-30117879)
chr5 (106-150)||(32485644-32485688)
[»] chr8 (16 HSPs)
chr8 (110-196)||(10086760-10086846)
chr8 (110-192)||(5667100-5667182)
chr8 (106-197)||(34229640-34229731)
chr8 (110-196)||(8796425-8796511)
chr8 (110-196)||(35441018-35441104)
chr8 (110-176)||(43844538-43844604)
chr8 (110-195)||(8243438-8243523)
chr8 (110-196)||(5033164-5033250)
chr8 (110-196)||(33841640-33841726)
chr8 (110-195)||(45191177-45191262)
chr8 (106-196)||(4958599-4958688)
chr8 (110-169)||(6296681-6296740)
chr8 (111-158)||(43844475-43844522)
chr8 (111-169)||(10086833-10086891)
chr8 (110-158)||(5033248-5033296)
chr8 (110-158)||(5667184-5667232)
[»] scaffold0586 (2 HSPs)
scaffold0586 (106-196)||(7096-7185)
scaffold0586 (108-158)||(7048-7098)
[»] chr7 (19 HSPs)
chr7 (110-196)||(11016872-11016958)
chr7 (110-195)||(34854745-34854830)
chr7 (110-195)||(38975808-38975893)
chr7 (110-196)||(4290548-4290634)
chr7 (126-192)||(22764753-22764819)
chr7 (110-196)||(27028842-27028928)
chr7 (110-224)||(45231867-45231985)
chr7 (106-195)||(30217504-30217592)
chr7 (113-196)||(15027548-15027631)
chr7 (110-193)||(41018280-41018363)
chr7 (110-157)||(42628383-42628430)
chr7 (134-187)||(10419485-10419538)
chr7 (110-169)||(11016945-11017004)
chr7 (111-194)||(41945859-41945942)
chr7 (133-195)||(7671961-7672023)
chr7 (110-158)||(4290632-4290680)
chr7 (110-174)||(27028731-27028795)
chr7 (133-193)||(29053366-29053426)
chr7 (139-195)||(48000769-48000825)
[»] chr6 (9 HSPs)
chr6 (106-196)||(17750902-17750991)
chr6 (110-195)||(551215-551300)
chr6 (110-196)||(24587464-24587550)
chr6 (130-197)||(13043480-13043547)
chr6 (110-155)||(24975755-24975800)
chr6 (110-158)||(24618604-24618652)
chr6 (134-196)||(10521898-10521960)
chr6 (133-191)||(31654331-31654389)
chr6 (188-224)||(10521938-10521974)
[»] chr4 (23 HSPs)
chr4 (110-199)||(30861820-30861909)
chr4 (110-196)||(23444318-23444404)
chr4 (110-196)||(35682169-35682255)
chr4 (110-196)||(51265448-51265534)
chr4 (133-196)||(38714849-38714912)
chr4 (110-196)||(6271705-6271791)
chr4 (131-196)||(40789203-40789268)
chr4 (111-158)||(5048887-5048934)
chr4 (121-196)||(47661856-47661931)
chr4 (133-196)||(52028575-52028638)
chr4 (134-224)||(55090009-55090107)
chr4 (110-158)||(42375097-42375145)
chr4 (110-196)||(26186065-26186149)
chr4 (133-196)||(42375036-42375099)
chr4 (110-172)||(3862619-3862681)
chr4 (110-172)||(3871376-3871438)
chr4 (164-197)||(28693971-28694004)
chr4 (110-158)||(30709987-30710035)
chr4 (126-158)||(41306637-41306669)
chr4 (110-158)||(47661929-47661977)
chr4 (110-158)||(51265532-51265580)
chr4 (188-224)||(55089890-55089926)
chr4 (188-224)||(55090085-55090121)
[»] chr2 (19 HSPs)
chr2 (121-196)||(15011294-15011369)
chr2 (110-196)||(16514427-16514513)
chr2 (110-182)||(9173044-9173116)
chr2 (121-196)||(6721965-6722040)
chr2 (111-158)||(33018632-33018679)
chr2 (110-195)||(29508741-29508826)
chr2 (110-169)||(6722027-6722086)
chr2 (106-157)||(24116008-24116059)
chr2 (110-156)||(14892349-14892395)
chr2 (110-158)||(14229356-14229404)
chr2 (121-193)||(14470644-14470716)
chr2 (110-158)||(38933674-38933722)
chr2 (133-196)||(2828610-2828673)
chr2 (133-195)||(6217274-6217336)
chr2 (126-196)||(8534165-8534235)
chr2 (106-156)||(14470591-14470641)
chr2 (110-155)||(6217227-6217272)
chr2 (188-224)||(14464568-14464604)
chr2 (110-158)||(32545875-32545923)
[»] scaffold0161 (2 HSPs)
scaffold0161 (110-187)||(27278-27355)
scaffold0161 (110-158)||(27223-27271)
[»] scaffold0180 (1 HSPs)
scaffold0180 (106-158)||(19121-19173)
[»] scaffold0047 (1 HSPs)
scaffold0047 (133-196)||(63783-63846)
[»] scaffold0016 (1 HSPs)
scaffold0016 (133-196)||(49752-49815)
[»] scaffold0481 (1 HSPs)
scaffold0481 (164-196)||(2936-2968)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 34060105 - 34060400
Alignment:
Q  16 agagaagagattaatgggaaataattgaatgtattaaaatatgtagcattgtttgtgggataatatgttctgggataacacttgtgtcggttgtgtgaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||      
T  34060105 agagaagagattaatgggaaataattgaatgtattaaaatatgtagcattgtttgtgggataacatgttttgggataacacttgtgtcaattgtgtga-- 34060202  T
Q  116 tagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaa--------acattgtgattgacaaatat 207  Q
     |||||||||||||||||||||||||||||||||||||||        ||||||||| ||| ||||||| ||        | ||||||||||||||||||    
T  34060203 -agagttggatgacattggtgatattggtcaatcataatg--------tttgtgtttttctctctttcataagtattgtgatattgtgattgacaaatat 34060293  T
Q  208 ca-ctcaactctatgtcaaagaagtgttatattttggtttagttaacaaggaaatgggtggggataatacaggtggaggagaaggattgggttgaaaggg 306  Q
    || |  ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||    
T  34060294 catcctaactctatgtcaaagaagtgccatattttggtttagttaacagggaaatgggtggggat-------gtggaggagaaggattgggttgaaaggg 34060386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 33689175 - 33689265
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  33689175 ttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 33689265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 51046208 - 51046122
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||||||||||||    
T  51046208 gtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtga 51046122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 30734537 - 30734451
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||| | |||||||||||| ||||| |||||| ||||||| |||| |||||||||||| |||||||||| ||||||||    
T  30734537 gtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtga 30734451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 55223231 - 55223321
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| | | |||| || ||||||||| |||||||||| ||||||||    
T  55223231 ttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtga 55223321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 47492187 - 47492096
Alignment:
Q  105 gttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| ||||||||||||||| |||||||||| ||||||| |||||| ||||||| |||  |||||||||||| | |||||||| ||||||||    
T  47492187 gttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 47492096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 41752967 - 41753052
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || ||| ||||||||||| | |||||||||| |||||||    
T  41752967 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtg 41753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 29031826 - 29031763
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  29031826 ggtgatattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 29031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 30580759 - 30580818
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    |||||||||| |||| |||||||||||||||||  |||||||||||||| ||||||||||    
T  30580759 gtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaatatttgtg 30580818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 43139844 - 43139762
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    ||||||||||||||| |||||||||||| ||||| |||| | |||| || |||  |||||||||||| |||||||||| ||||    
T  43139844 gtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcatt 43139762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 51046077 - 51046135
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||| ||| ||||||    
T  51046077 tgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtg 51046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 30580890 - 30580805
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||| |||| ||||||| |||| |||||||||||| ||||||| | |  |||||||||| | ||||||||||| |||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtga 30580805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 45103112 - 45103160
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  45103112 gtgacatagagttgggtgacattggtgatattgatcaatcacaatgtca 45103160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 18321657 - 18321740
Alignment:
Q  113 acatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||||| ||| |||||||| |||||||||||| ||||||| ||  ||||||||| ||| | |||||||  ||||||||    
T  18321657 acatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtga 18321740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 47677367 - 47677304
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| |||| ||||||| ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  47677367 ggtgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 47677304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 30476585 - 30476523
Alignment:
Q  134 gtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| |||||||||||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  30476585 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 30476523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 49418803 - 49418704
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaa--------cattgtgattgacaaatatcactcaactctatgtca 224  Q
    ||||| |||||||||| ||||| ||| |||  |||||||||||| |||||||||||        ||||||||||||| |||||||| |||||||||||||    
T  49418803 ggtgacattggtcaattataatatcataatgcttgtgtttctctctctttcacaaatattatgacattgtgattgaccaatatcacccaactctatgtca 49418704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 50524706 - 50524782
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaa 187  Q
    |||||||||||||  ||| | || ||| ||||  |||||||||||||| ||| ||||||||||||| ||||||||||    
T  50524706 tgacatagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaa 50524782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 1801558 - 1801496
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||| ||||| |||||| |||| || ||| ||||||||||||| |||||||||| |||||||    
T  1801558 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 1801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 50524837 - 50524791
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgt 156  Q
    ||||||||||||||  |||||||||||||||| |||||||| |||||    
T  50524837 gtgacatagagttgagtgacattggtgatattagtcaatcacaatgt 50524791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 1801449 - 1801494
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatg 155  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  1801449 gtgacatagagttgggtgacattggtgacattggccaatcacaatg 1801494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 49418717 - 49418753
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  49418717 ggtgatattggtcaatcacaatgtcataatatttgtg 49418753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 36290542 - 36290427
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtgattgacaaatatca 209  Q
    ||||||||||||||| |||||||||||  ||||  |||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||| | ||| |||    
T  36290542 gtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtgattggccaatgtca 36290443  T
Q  210 ctcaactctatgtcaa 225  Q
    | ||||||||||||||    
T  36290442 cccaactctatgtcaa 36290427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 29179732 - 29179646
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  29179732 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 29179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 48498418 - 48498495
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaa 187  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||  || ||| ||||||||||||| ||||||||||    
T  48498418 gtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaa 48498495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 9157309 - 9157400
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtgat 197  Q
    ||||||||||||||||||| |||||||||| | ||||  |||||| ||||||| |||  |||||||||||| |||||| ||| |||||||||    
T  9157309 ttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgat 9157400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 1091679 - 1091593
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| ||| ||||||||  |||  |||||| ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  1091679 gtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 1091593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 32540883 - 32540797
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||| ||||||||||||||||| ||||  |||||| ||||| | |||  |||||||||||| |||||||||| ||||||||    
T  32540883 gtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtga 32540797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 37155049 - 37155135
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||| | |||||||||||| ||||| |||||| ||||||| |||  |||||||||||| ||||||||||  |||||||    
T  37155049 gtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtga 37155135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 48994052 - 48993966
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  48994052 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 48993966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 5995372 - 5995457
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||| |||||||||||| | ||||| |||||| |||| || |||  |||||||||||| |||||||||| |||||||    
T  5995372 gtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5995457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 44706919 - 44706834
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| |  |||  |||||||||||| |||||||||| |||||||    
T  44706919 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtg 44706834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 47303421 - 47303484
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||  |||||| ||||||| ||| ||||||||||||| |||||||||||||||||||    
T  47303421 ggtgatattgaccaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtga 47303484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 4608995 - 4609085
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||| || ||||||| |||||| ||||| ||||  | |||| ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  4608995 ttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 4609085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 5695001 - 5694942
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    ||||| |||||||||| | ||||||| ||||||||||||||||| |||||||||| ||||    
T  5695001 ggtgacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 29371394 - 29371457
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| ||||| |||||| ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  29371394 ggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 29371457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 17127699 - 17127613
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| |||||||| | ||||||| |||| ||||  |||||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  17127699 gtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 17127613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 45728294 - 45728372
Alignment:
Q  114 catagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    ||||||||||| ||| |||||||||||||  |||||| ||| ||| |||  |||||||||||| |||||||||| ||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcatt 45728372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 21630045 - 21630118
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttc 183  Q
    |||||||| |||||| |||||||||||| ||||  |||||| ||||||| |||  |||||||||||| ||||||    
T  21630045 gtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 33219705 - 33219660
Alignment:
Q  113 acatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||||||||||||| |||| ||||||| |||||||    
T  33219705 acatagagttggatgacattggtgacattgatcaatcacaatgtca 33219660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 46932000 - 46932061
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtt 171  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || ||| ||||||||    
T  46932000 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 46932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 15220946 - 15220906
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatca 150  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  15220946 gtgacatagagttgggtgacattggtgatattggccaatca 15220906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 38674615 - 38674554
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||| |||||||||||||| |||  |||||||||||  |||||||||| ||||||||    
T  38674615 ggtgatattggccaatcataatgtcacaatgcttgtgtttctc--tctttcacaagcattgtga 38674554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 741614 - 741551
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| ||||||| |||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  741614 ggtgacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 741551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 8337951 - 8337900
Alignment:
Q  145 caatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||| |||| || ||| ||||||||||||| |||||||||||||||||||    
T  8337951 caatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtga 8337900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 2573277 - 2573236
Alignment:
Q  113 acatagagttggatgacattggtgatattggtcaatcataat 154  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  2573277 acatagagttggatgatattggtgacattggccaatcataat 2573236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 5995504 - 5995459
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatg 155  Q
    |||||||||||||||||||||||||||| ||||  |||||| ||||    
T  5995504 gtgacatagagttggatgacattggtgacattgaccaatcacaatg 5995459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 7788325 - 7788269
Alignment:
Q  168 tgtttctctttctttcacaaacattgtgattgacaaatatcactcaactctatgtca 224  Q
    ||||||||| ||||||||||| ||| |||||||| || ||| | |||||||||||||    
T  7788325 tgtttctctctctttcacaaatattatgattgaccaacatcgcccaactctatgtca 7788269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 29371507 - 29371455
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| | | |||||||||||||||||  |||||| |||||||    
T  29371507 ttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtca 29371455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 48993920 - 48993968
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||||||    
T  48993920 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtca 48993968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 30117962 - 30117877
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||| | ||||| |||||||||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtga 30117877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 39031285 - 39031186
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtgattgacaaatatcac 210  Q
    ||||||||||| || |||||||||||| | || ||||||| ||| ||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  39031285 tgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtgattgaccaatatcac 39031186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 19655161 - 19655247
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || ||| ||||||||||||| |||||||||| ||||||||    
T  19655161 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtga 19655247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 3180198 - 3180109
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||| |||||||||||| | |||||||||| |||||||||||| |||| || |||  |||||||||||| |||||||||||||||||||    
T  3180198 ttgtgtcacatagagttgg-taacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtga 3180109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 12913942 - 12913890
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  12913942 ttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtca 12913890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 291100 - 291186
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  |||| ||||| | |||||||||||||||||||    
T  291100 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtga 291186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 16439146 - 16439227
Alignment:
Q  115 atagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||| | | |||||||| |||||||||||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  16439146 atagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 16439227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 12913802 - 12913888
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    |||||||||||| |||||  |||||||||||| ||||| |||||| ||||||| |||  |||||| ||||| |||||||||| ||||    
T  12913802 ttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcatt 12913888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 19598335 - 19598417
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    ||||||||||||||| | |||||||||| |||||||||||| |||  || |||  |||||||||||| |||||||||| ||||    
T  19598335 gtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 2356410 - 2356366
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatca 150  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  2356410 ttgtgtgacatagagttggatgacattggtgacattggccaatca 2356366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 28818943 - 28819006
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| |||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||||||||    
T  28818943 ggtgacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtga 28819006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 29699381 - 29699456
Alignment:
Q  121 ttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  29699381 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 29699456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 2953325 - 2953277
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||||||    
T  2953325 gtgacatagagttgggtgacattggtgacattggccaatcacaatgtca 2953277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 28819052 - 28819004
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||  ||| |||||||| ||||||||||||||||||||    
T  28819052 gtgacatagagttgagtgatattggtgacattggtcaatcataatgtca 28819004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 291232 - 291173
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    |||| |||||||||| |||||||||||| |||| ||||||| ||||||| ||| ||||||    
T  291232 gtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtg 291173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 16802470 - 16802533
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| ||||| |||||| ||||| | ||||||||||||||||| ||||| |||| ||||||||    
T  16802470 ggtgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtga 16802533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 7009452 - 7009423
Alignment:
Q  121 ttggatgacattggtgatattggtcaatca 150  Q
    ||||||||||||||||||||||||||||||    
T  7009452 ttggatgacattggtgatattggtcaatca 7009423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 2093940 - 2093988
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| ||| |||||||| |||| ||||||| |||||||    
T  2093940 gtgacatagagttgggtgatattggtgacattgatcaatcacaatgtca 2093988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 16971279 - 16971231
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||||||    
T  16971279 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtca 16971231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 29699502 - 29699454
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| ||| |||||||| ||||| |||||| |||||||    
T  29699502 gtgacatagagttgggtgatattggtgacattggccaatcacaatgtca 29699454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 30117831 - 30117879
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    |||| |||||||||| |||||||||||||||||  |||||| |||||||    
T  30117831 gtgatatagagttgggtgacattggtgatattgaccaatcacaatgtca 30117879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 32485688 - 32485644
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatca 150  Q
    |||||||||| |||||||| |||||||||||| |||| |||||||    
T  32485688 ttgtgtgacacagagttgggtgacattggtgacattgatcaatca 32485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 10086760 - 10086846
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||| |||| ||||||| |||| |||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||    
T  10086760 gtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtga 10086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 5667100 - 5667182
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| |||  |||| ||||||| |||||||||| ||||    
T  5667100 gtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcatt 5667182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 34229640 - 34229731
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtgat 197  Q
    ||||||||||||||||||| ||||||| |||| ||  |||||||| ||||||| |||  |||||||||||| |||||||||| |||||||||    
T  34229640 ttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgat 34229731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 8796425 - 8796511
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||| | ||| ||| ||||||||||||||||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  8796425 gtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtga 8796511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 35441104 - 35441018
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  35441104 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 35441018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 43844604 - 43844538
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctct 176  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||  ||||||||||||    
T  43844604 gtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctct 43844538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 8243523 - 8243438
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||| ||||||||||||  ||||||||||| |||| || |||  |||||||||||| |||||||||| |||||||    
T  8243523 gtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 8243438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 5033164 - 5033250
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  5033164 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 5033250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 33841726 - 33841640
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  33841726 gtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 33841640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 45191262 - 45191177
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||||||| |||||||| ||||  |||||| ||||| | ||| ||||||||||||| ||||||| || |||||||    
T  45191262 gtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtg 45191177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 4958599 - 4958688
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||||||| || | ||| |||| ||| ||||| |||||| ||||||| ||| ||||||||||||| ||||||||||  |||||||    
T  4958599 ttgtgtgacatagaatttg-tgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtga 4958688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 6296740 - 6296681
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    |||| |||||||||||||||||| |||| ||| |||||| ||||||||| |||| |||||    
T  6296740 gtgatatagagttggatgacattagtgacattagtcaattataatgtcacaatacttgtg 6296681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 43844475 - 43844522
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    |||||||||||||| ||| |||| |||||||||| |||||||||||||    
T  43844475 tgacatagagttgggtgatattgatgatattggttaatcataatgtca 43844522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 10086891 - 10086833
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    |||||||||||||| |||||||||||| ||||  |||||| ||||||| ||| ||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 10086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 5033296 - 5033248
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||||||    
T  5033296 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtca 5033248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 5667232 - 5667184
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||| |||||||||||||| ||||| |||| | |||||||    
T  5667232 gtgacatagagtttgatgacattggtgacattggccaattacaatgtca 5667184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 7185 - 7096
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||| ||||||| |||  |||||||||||| |||||||||| ||||||||    
T  7185 ttgtgtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 7096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 7048 - 7098
Alignment:
Q  108 gtgtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||||| |||||||||||||||| | |||||| |||||||    
T  7048 gtgtgacatagagttgggtgacattggtgatattagccaatcacaatgtca 7098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 11016872 - 11016958
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||||||||||||    
T  11016872 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtga 11016958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 34854830 - 34854745
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||| || ||| ||||||||||| | |||||||||| |||||||    
T  34854830 gtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtg 34854745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 38975808 - 38975893
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||| |||||||||| | |||||||||||| |||| || |||  |||||||||||| |||||||||| |||||||    
T  38975808 gtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 38975893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 4290548 - 4290634
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||| || |||  | |||||||||| ||||||||||  |||||||    
T  4290548 gtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtga 4290634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 22764819 - 22764753
Alignment:
Q  126 tgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacatt 192  Q
    |||||||||||||||||| |||||| ||||||| ||| ||||||||||||| |||||||||| ||||    
T  22764819 tgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 27028928 - 27028842
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||| |||| |||  ||||||| |||||||||||| ||||||| ||| ||||||||||||| ||||||| || ||||||||    
T  27028928 gtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtga 27028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 45231985 - 45231867
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaa----cattgtgattgacaaat 205  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||| | |||  || ||||||||| |||||||||||    |||||||||||   |||    
T  45231985 gtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaaagtggcattgtgattggtcaat 45231886  T
Q  206 atcactcaactctatgtca 224  Q
     |||| |||||||||||||    
T  45231885 gtcacccaactctatgtca 45231867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 30217592 - 30217504
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||||| | |||||||| ||| ||| | |||||| ||| ||||||| ||| ||||||||| |||||||||| |||||||    
T  30217592 ttgtgtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 15027548 - 15027631
Alignment:
Q  113 acatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||||  |||||||||||| ||||  |||||| |||  || ||| ||||||||||||| |||||||||| ||||||||    
T  15027548 acatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtga 15027631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 41018363 - 41018280
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattg 193  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||| || |||  || ||||||||| |||||||||| |||||    
T  41018363 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattg 41018280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 42628430 - 42628383
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtc 157  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  42628430 gtgacatagagttgggtgacattggtgatattggccaatcacaatgtc 42628383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 10419485 - 10419538
Alignment:
Q  134 gtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaa 187  Q
    |||| |||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  10419485 gtgacattggtcaatcataatgttacaatacttgtgtttctctctctttcacaa 10419538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 11017004 - 11016945
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    ||||||||||||||| |||||||||||| ||||  |||||| ||||||| ||| ||||||    
T  11017004 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 11016945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 41945859 - 41945942
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgt 194  Q
    ||||||||| |||  |||||||| ||| ||| |||||||||||||||| ||| |||| |||| | | |||||||||| ||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgt 41945942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 7672023 - 7671961
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||| ||||| |||||| |||| || ||| ||||||||||||| |||||||||| |||||||    
T  7672023 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 7671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 4290680 - 4290632
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    |||||||| |||||| |||||||||||| ||||| |||||| |||||||    
T  4290680 gtgacatacagttgggtgacattggtgacattggccaatcacaatgtca 4290632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 27028731 - 27028795
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttct 174  Q
    |||||||| |||||  |||||||||||| ||||| |||||| ||||||| |||  ||||||||||    
T  27028731 gtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 29053426 - 29053366
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattg 193  Q
    ||||| ||||| |||||| |||| || ||| ||||||||||||| |||||||||| |||||    
T  29053426 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattg 29053366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 48000769 - 48000825
Alignment:
Q  139 attggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||| |||||| |||| || ||| ||||||||||||| ||||||||| ||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtg 48000825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 17750902 - 17750991
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| ||||| ||| ||| |||||||||| ||||||||    
T  17750902 ttgtgtgacatagagttg-atgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtga 17750991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 551300 - 551215
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    |||||||||| |||||||| |||||||| ||||| |||||| |||| || |||  |||||||||||| ||||||||||||||||||    
T  551300 gtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 24587464 - 24587550
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| ||||||| |||| |||||||||||| ||||||| |||  |||||||||||  | |||||||| ||||||||    
T  24587464 gtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtga 24587550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 13043480 - 13043547
Alignment:
Q  130 attggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtgat 197  Q
    ||||| ||||||||||||||  ||||||| |||  |||||||||||| |||||||||| |||||||||    
T  13043480 attggcgatattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgat 13043547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 24975755 - 24975800
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatg 155  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||    
T  24975755 gtgacatagagttggctgacattggtgacattggtcaatcacaatg 24975800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 24618604 - 24618652
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| |||| ||||||| |||||||    
T  24618604 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtca 24618652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 10521960 - 10521898
Alignment:
Q  134 gtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| |||||||||||| ||||||| |||  |||||||||||| ||||||| || ||||||||    
T  10521960 gtgacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtga 10521898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 31654331 - 31654389
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacat 191  Q
    ||||| ||||| |||||| ||||||| |||  |||||||||||| ||||||||||||||    
T  31654331 ggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaaacat 31654389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 10521938 - 10521974
Alignment:
Q  188 acattgtgattgacaaatatcactcaactctatgtca 224  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  10521938 acattgtgattgaccaatgtcactcaactctatgtca 10521974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 30861909 - 30861820
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtgattg 199  Q
    ||||||||||||||||||| |||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| |||||||||||    
T  30861909 gtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgattg 30861820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 23444404 - 23444318
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  23444404 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 23444318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 35682169 - 35682255
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||| | ||| |||||||| ||||| |||||| ||||||| |||| |||||||||||| |||||||||| ||||||||    
T  35682169 gtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtga 35682255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 51265448 - 51265534
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  51265448 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 51265534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 38714849 - 38714912
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||| |||||| ||||||| ||||||| ||||||| |||||||||||||||||||||    
T  38714849 ggtgatattggccaatcacaatgtcataatatttatgtttctatttctttcacaaacattgtga 38714912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 6271705 - 6271791
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| ||| |||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  6271705 gtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 6271791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 40789203 - 40789268
Alignment:
Q  131 ttggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||| ||||| |||||| ||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  40789203 ttggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 40789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 5048934 - 5048887
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  5048934 tgacatagagttgggtgacattgatgacattggtcaatcataatgtca 5048887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 47661856 - 47661931
Alignment:
Q  121 ttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| |||||||||||| ||||| |||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  47661856 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 47661931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 52028575 - 52028638
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||| ||||||  |||||| ||| ||||||||||||| |||||||||| ||||||||    
T  52028575 ggtgatattggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 52028638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 55090107 - 55090009
Alignment:
Q  134 gtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaa--------acattgtgattgacaaatatcactcaactctatgtca 224  Q
    |||| |||||||||||| ||||||| |||  |||||| ||||| ||||||||||        |||||||||||||| ||| ||||||||||||||||||    
T  55090107 gtgacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55090009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 42375145 - 42375097
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| |||| ||||||| |||||||    
T  42375145 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtca 42375097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 26186149 - 26186065
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| | |||||| ||| ||||| |||||| ||| ||| |||  |||||||||||  |||||||||| ||||||||    
T  26186149 gtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttctc--tctttcacaagcattgtga 26186065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 42375036 - 42375099
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| |||||||||||| |||| || |||  |||||||||||| |||||||||| ||||||||    
T  42375036 ggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 42375099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 3862681 - 3862619
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgttt 172  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  ||||||||    
T  3862681 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 3871438 - 3871376
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgttt 172  Q
    ||||||||||||||| |||||||||||| ||||| |||||| |||| || |||  ||||||||    
T  3871438 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 28694004 - 28693971
Alignment:
Q  164 tttgtgtttctctttctttcacaaacattgtgat 197  Q
    ||||||||||||| ||||||||||||||||||||    
T  28694004 tttgtgtttctctctctttcacaaacattgtgat 28693971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 30710035 - 30709987
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||| | |||||||||||| ||||| |||||| |||||||    
T  30710035 gtgacatagagttaggtgacattggtgacattggccaatcacaatgtca 30709987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 41306637 - 41306669
Alignment:
Q  126 tgacattggtgatattggtcaatcataatgtca 158  Q
    |||||||||||||||||||||| ||||||||||    
T  41306637 tgacattggtgatattggtcaaccataatgtca 41306669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 47661977 - 47661929
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||||||    
T  47661977 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtca 47661929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 51265580 - 51265532
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||| ||||||||| |||||||||||| ||||  ||||||||||||||    
T  51265580 gtgacttagagttgggtgacattggtgacattgaccaatcataatgtca 51265532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 55089926 - 55089890
Alignment:
Q  188 acattgtgattgacaaatatcactcaactctatgtca 224  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  55089926 acattgtgattgaccaatgtcactcaactctatgtca 55089890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 55090085 - 55090121
Alignment:
Q  188 acattgtgattgacaaatatcactcaactctatgtca 224  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  55090085 acattgtgattgaccaatgtcactcaactctatgtca 55090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 15011294 - 15011369
Alignment:
Q  121 ttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||| |||||||||||||||||| |||||| |||| || ||| ||||||||||||| |||||||||| ||||||||    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtga 15011369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 16514427 - 16514513
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||| |||||||||||| ||||| ||||||  ||| || |||  |||||||||||| |||||||||| ||||||||    
T  16514427 gtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtga 16514513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9173116 - 9173044
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttcttt 182  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||| || |||  |||| |||||||||||||    
T  9173116 gtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttt 9173044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 6721965 - 6722040
Alignment:
Q  121 ttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||||||| ||||  |||||| ||| ||| |||  |||||||||||| |||||||||||||||||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtga 6722040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 33018679 - 33018632
Alignment:
Q  111 tgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtca 33018632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 29508826 - 29508741
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||||||||||||| ||| |||||||| ||||| |||||| |||| |  |||  |||||||||||| |||||||||| |||||||    
T  29508826 gtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtg 29508741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 6722086 - 6722027
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtg 169  Q
    ||||||||||||||| ||||||| |||||||||| |||||| ||||||| ||| ||||||    
T  6722086 gtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtg 6722027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 24116059 - 24116008
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtc 157  Q
    ||||||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  24116059 ttgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtc 24116008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 14892395 - 14892349
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgt 156  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||    
T  14892395 gtgacatagagttggatgacattggtgacattgatcaatcacaatgt 14892349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 14229356 - 14229404
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||| | |||||||||||| |||||||||||| |||||||    
T  14229356 gtgacatagagttcggtgacattggtgacattggtcaatcacaatgtca 14229404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 14470716 - 14470644
Alignment:
Q  121 ttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattg 193  Q
    |||||||| |||||| | ||| | |||||| ||||||| ||| ||||||||||||| |||||||||| |||||    
T  14470716 ttggatgatattggtaacattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattg 14470644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 38933722 - 38933674
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  38933722 gtgacatagagttgggtgacattggtgacgttggccaatcataatgtca 38933674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 2828610 - 2828673
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| ||||| |||||| |||||||||||  |||||||||||| ||||||| || ||||||||    
T  2828610 ggtgacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtga 2828673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 6217336 - 6217274
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtg 195  Q
    ||||| ||||| |||||| |||| || ||| ||||||||||||| |||||||||| |||||||    
T  6217336 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 6217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 8534165 - 8534235
Alignment:
Q  126 tgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    |||||||| ||| |||| ||||| | ||||| ||||||||||||||||||| | ||||||||  |||||||    
T  8534165 tgacattgatgacattgatcaattacaatgtaaaaatatttgtgtttctctctatttcacaagaattgtga 8534235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 14470591 - 14470641
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgt 156  Q
    ||||||||||||||||||| |||||||||||| ||||  |||||| |||||    
T  14470591 ttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 14470641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 6217227 - 6217272
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatg 155  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  6217227 gtgacatagagttgggtgacattggtgacattggccaatcacaatg 6217272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 14464604 - 14464568
Alignment:
Q  188 acattgtgattgacaaatatcactcaactctatgtca 224  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  14464604 acattgtgattgaccaatgtcactcaactctatgtca 14464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 32545923 - 32545875
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    |||||||||||||   |||||||||||| ||||| ||||||||||||||    
T  32545923 gtgacatagagtttagtgacattggtgacattggccaatcataatgtca 32545875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 27355 - 27278
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaa 187  Q
    |||| |||||||||| |||||||||||||||||| |||||| |||| || |||  || ||||||||| ||||||||||    
T  27355 gtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaa 27278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 27223 - 27271
Alignment:
Q  110 gtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||| ||||||| |||||||||| |||||| |||||||    
T  27223 gtgacatagagttgggtgacattagtgatattggccaatcacaatgtca 27271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 19121 - 19173
Alignment:
Q  106 ttgtgtgacatagagttggatgacattggtgatattggtcaatcataatgtca 158  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||| |||||||    
T  19121 ttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtca 19173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 63783 - 63846
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| ||||| |||||| |||| || ||| ||||||||||||| |||||||||| ||||||||    
T  63783 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtga 63846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 49815 - 49752
Alignment:
Q  133 ggtgatattggtcaatcataatgtcaaaatatttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||| ||||| |||||| |||| || |||  ||||||||||||||||||||||| ||||||||    
T  49815 ggtgacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtga 49752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 2968 - 2936
Alignment:
Q  164 tttgtgtttctctttctttcacaaacattgtga 196  Q
    ||||||||||||| |||||||||||||||||||    
T  2968 tttgtgtttctctctctttcacaaacattgtga 2936  T

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