View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_44 (Length: 335)
Name: NF8503_low_44
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 226
Target Start/End: Original strand, 1564636 - 1564828
Alignment:
| Q |
31 |
agaagaatactaccaaacaaaagtttgaaaaagtttatgttattttttatatcatgatggctatttgagatggtaacatgaccaattcttcaacctatta |
130 |
Q |
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| T |
1564636 |
agaagaatactaccaaacaaaagtttgaaaaagtttatgttattttttatatcatgatggctatttgagatggtaacatgaccaattcttcaacctatta |
1564735 |
T |
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| Q |
131 |
aattatgcatatgcagagtcaatatcaattacaaagtcctaacttatgatgaaactgatattttaacttttcaatagcttctaatagtgacaaaaa |
226 |
Q |
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| T |
1564736 |
aattatgcatatgcagagtcaatatcaattacaaagtcctaactt---atgaaactgatattttaacttttcaatagcttctaatagtgacaaaaa |
1564828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 1564863 - 1564923
Alignment:
| Q |
261 |
aagtagatatttggtacacatcaattttgttctaatttaaggtcttacattgttgcaatct |
321 |
Q |
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| T |
1564863 |
aagtagatatttggtacacatcaattttgttctaatttaaggtcttacattgttgcaatct |
1564923 |
T |
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