View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_46 (Length: 327)
Name: NF8503_low_46
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 24525162 - 24524884
Alignment:
| Q |
1 |
gggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgactgcagctgattgtaattcatgtattatcataggaaggaacttc |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||| |||||||||||||||||||||||||| |
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| T |
24525162 |
gggaagatggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaattacaatgcatgtattatcataggaaggaacttc |
24525063 |
T |
|
| Q |
101 |
catgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtttattactgccaacgtctggtttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24525062 |
-atgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattgctt---tattactgccaacgtctggtttaata |
24524967 |
T |
|
| Q |
201 |
tatcaagtcactgcaactcagaatagatggtaaattatcagttactaaaatctaagatattatcagttactcttatagttatt |
283 |
Q |
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||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24524966 |
tatgaagtcactgcaactcataatagatggtcaattatcagttactaaaatctaagatactatcagttactcttatagttatt |
24524884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9123294 - 9123088
Alignment:
| Q |
1 |
gggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgactgcagctgattgtaattcatgtattatcataggaaggaacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
9123294 |
gggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaat----gtattatcaaaggaaggaacttc |
9123199 |
T |
|
| Q |
101 |
catgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttg---------tttattactgccaacgtct |
191 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9123198 |
-atgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaacgtct |
9123100 |
T |
|
| Q |
192 |
ggtttaatatat |
203 |
Q |
| |
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||||||| |||| |
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| T |
9123099 |
ggtttaagatat |
9123088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9131401 - 9131195
Alignment:
| Q |
1 |
gggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgactgcagctgattgtaattcatgtattatcataggaaggaacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
9131401 |
gggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaat----gtattatcaaaggaaggaacttc |
9131306 |
T |
|
| Q |
101 |
catgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttg---------tttattactgccaacgtct |
191 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9131305 |
-atgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaacgtct |
9131207 |
T |
|
| Q |
192 |
ggtttaatatat |
203 |
Q |
| |
|
||||||| |||| |
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|
| T |
9131206 |
ggtttaagatat |
9131195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 9123095 - 9123021
Alignment:
| Q |
253 |
taagatattatcagttactcttatagttattactgccaatgtctttatttgatgtttgtgaaccattgatactca |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9123095 |
taagatattatcagttactcttatagttattactgccaatgtctttatttgatgtttgtgaagcattgatactca |
9123021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 9131202 - 9131128
Alignment:
| Q |
253 |
taagatattatcagttactcttatagttattactgccaatgtctttatttgatgtttgtgaaccattgatactca |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9131202 |
taagatattatcagttactcttatagttattactgccaatgtctttatttgatgtttgtgaagcattgatactca |
9131128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9039036 - 9039096
Alignment:
| Q |
1 |
gggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgactgca |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
9039036 |
gggaagaaggagaaattatcattctcgattaattagttttttatctttaggaatgactgca |
9039096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
| Q |
3 |
gaagaaggagaaattatcattctcgattaattagctttttat |
44 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39815109 |
gaagaaggagaagttatcattctcgattaattagctttttat |
39815150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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