View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_48 (Length: 323)
Name: NF8503_low_48
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52271223 - 52270987
Alignment:
| Q |
1 |
ttatttttgtttttatatcaaaattgtaatgtgtaacaggagaagaacgctcaattcttttcaccggctgaagatgaaagcagcagaggagttttcaatc |
100 |
Q |
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| T |
52271223 |
ttatttttgtttttatatcaaaattgtaatgtgtaacaggagaagaacgctcaattcttttcaccggctgaagatgaaagcagcaggggagttttcaatc |
52271124 |
T |
|
| Q |
101 |
tcataaagaaattaaatgttgttcctgataccaggataaaaggaagaactccatgtaagatctattaattttagtatttcacgaaattgacaaaacctat |
200 |
Q |
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| T |
52271123 |
tcataaagaaattaaatgttgttcctgataccaggataaaaggaagaattccatgtaagatctattaattttagtatttcacgaaattgacaaaacctat |
52271024 |
T |
|
| Q |
201 |
gcaatgtacaccaatcaggctttgagattatgataac |
237 |
Q |
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| T |
52271023 |
gcaatgtacaccaatcaggctttgagattatgataac |
52270987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 52270988 - 52270875
Alignment:
| Q |
210 |
accaatcaggctttgagattatgataacgctaacggtttgttccattattgtatgctgcagccatatttgatatgccacacattggccaaaacataacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270988 |
accaatcaggctttgagattatgataacgctaacggtttgttccattattgtatgctgcagccatatttgatatgccacacattggccaaaacataacta |
52270889 |
T |
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| Q |
310 |
aatcatcaaaggta |
323 |
Q |
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|||||||||||||| |
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| T |
52270888 |
aatcatcaaaggta |
52270875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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