View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_5 (Length: 623)
Name: NF8503_low_5
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 67 - 600
Target Start/End: Original strand, 2582276 - 2582812
Alignment:
| Q |
67 |
ttggtttaaaatatatttgtccataaatataagcatctattgcgaatttcattcttattcagaaaaattaatagcagagttaatgtgtctattttatgca |
166 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2582276 |
ttggtttataatatatttgtccataaatataagcatctattctgaatttcattcttattcagaaaaattaatagcagagttaatgtatctattttatgca |
2582375 |
T |
|
| Q |
167 |
ttaatatacttaaaataccctctctatgtgcatacagttaatctcga--ttttgtattccaagacacttggagaatctcaaaagagattatgggagtgtc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2582376 |
ttaatatacttaaaataccctctctatgtgcatacagttaatctcgattttttgtattccaagacacttagagaatctcaaaagagattatgggagtgtc |
2582475 |
T |
|
| Q |
265 |
atagagaaggttccatgagttaatgaatttatagcctaattttccaacgcattcgaggaacttgatgcagcaaagtgagtgttgtag-aannnnnnnnnn |
363 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
2582476 |
atagagaaggttccatgagttaatgaatttatagcctaattttccaacgcattcgaggaacttgatgcagcaaagtgagtattgtagaaattttcttttt |
2582575 |
T |
|
| Q |
364 |
acgaaactaaattaacctatttaaattgacaccatacaaaattaaatctgaaacctcgaggaagaatatactccaaaatcctaagtcgacaccatcagac |
463 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2582576 |
acgaaactaaattagcttatttaaattgacaccatacaaaatcaaatctgaaatctcgaggaagaacatactccaagatcctaagtcgacaccatcagac |
2582675 |
T |
|
| Q |
464 |
caacctaaatgagttgactcatataataattgtcttagaaattgttaacgcaccttaagtgttatagaacttaattaatatttttatttgagacaacatt |
563 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2582676 |
caacctaaatgagttgactcatataataattgttctagaaattgttaacgcaccttaagtgttatagaacttaattaatatttttatttgagacaacatt |
2582775 |
T |
|
| Q |
564 |
gaataaaataataataatataagaatgtacattctcc |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2582776 |
gaataaaataataataatataagaatgtacattctcc |
2582812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 45192599 - 45192541
Alignment:
| Q |
129 |
aaaaattaatagcagagttaatgtgtctattttatgcattaatatacttaaaataccct |
187 |
Q |
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||||||| |||| | | ||||||||||||||||||| || ||||||| ||||||||||| |
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| T |
45192599 |
aaaaattgatagtataattaatgtgtctattttatgtataaatatacctaaaataccct |
45192541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 23632698 - 23632645
Alignment:
| Q |
421 |
gaggaagaatatactccaaaatcctaagtcgacaccatcagaccaacctaaatg |
474 |
Q |
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|||||||| |||| |||||| |||||||| |||||| |||||||||||||||| |
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| T |
23632698 |
gaggaagagtatattccaaagtcctaagttaacaccaccagaccaacctaaatg |
23632645 |
T |
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