View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_50 (Length: 309)
Name: NF8503_low_50
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 34335734 - 34335458
Alignment:
| Q |
13 |
atcatcactacctgctcaaattcaagttnnnnnnnntgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgattcggatt |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335734 |
atcatcactacctgctcaaattcaagttaaaaaaaatgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgattcggatt |
34335635 |
T |
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| Q |
113 |
aagatacaacttgcatgtatcatgtgatacctaacatttcaagaatgaaattactcacatgcagctaactctatttgtgtctggtagataaattccaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34335634 |
aagatacaacttgcatgtatcatgtgatacctaacatt-caagaatggaattactcacatgcagctaactctatttgcgtctggtagataaattccaaaa |
34335536 |
T |
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| Q |
213 |
ctgctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctccc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335535 |
ctgctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctccc |
34335458 |
T |
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