View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_52 (Length: 308)
Name: NF8503_low_52
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 11367824 - 11367538
Alignment:
| Q |
1 |
aagaattgggaggtgtgaatagttgggaaagggggtgtgaaataattagtgatgcggtggtggcgattttagggtttagcaataataataataaatgaga |
100 |
Q |
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| T |
11367824 |
aagaattgggaggtgtgaatagttgggaaagggggtgtgaaataattagtgatgcggtggtggcgattttagggtttagcaataataataataaatgaga |
11367725 |
T |
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| Q |
101 |
gtgagaaaaggattgtaaacattgcatcgacagagattttggttagagcgggagtgagagagaaaggtatgcaaccatgtactatacaaaaatactagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11367724 |
gtgagaaaaggattgtaaacattgcatcgacagagattttggttagagcgggagtgagagagaaaggtatgcaaccatgtactatacaaaaatac---ta |
11367628 |
T |
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| Q |
201 |
aatacaaaaatttcaatgcattgacttaaaaaatttgatgattgtaagnnnnnnntaacttatattattttaatgcttggagttggtttt |
290 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11367627 |
aatacaaaaatctcaaagcattgacttaaaaaatttgatgattgtaagaaaaaaataacttatattattttaatgcttggagttggtttt |
11367538 |
T |
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