View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_53 (Length: 307)
Name: NF8503_low_53
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 9131155 - 9130891
Alignment:
| Q |
25 |
tttggtgtttgtgaaccattgatactcattcaacagttattgatggtcaactataagttactgtaatctaaggtgtgatcaaaggtgttttcttggattg |
124 |
Q |
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| T |
9131155 |
tttgatgtttgtgaagcattgatactcattcaacagttattgatggtcaattataagttactgtaatctaagatattatgt--gttgcatttaaggtgtg |
9131058 |
T |
|
| Q |
125 |
g-catagcaattattagtccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatt |
223 |
Q |
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| T |
9131057 |
atcaaagatattattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatt |
9130958 |
T |
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| Q |
224 |
tgggttctttggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattg |
290 |
Q |
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| T |
9130957 |
tgggttctttggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattg |
9130891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 25 - 280
Target Start/End: Complemental strand, 9123048 - 9122794
Alignment:
| Q |
25 |
tttggtgtttgtgaaccattgatactcattcaacagttattgatggtcaactataagttactgtaatctaaggtgtgatcaaaggtgttttcttggattg |
124 |
Q |
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| T |
9123048 |
tttgatgtttgtgaagcattgatactcattcaacagttattgatggtcaattataagttactgtaatctaagatattatgt--gttgcatttaaggtgtg |
9122951 |
T |
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| Q |
125 |
g-catagcaattattagtccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatt |
223 |
Q |
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| T |
9122950 |
atcaaagatattattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatt |
9122851 |
T |
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| Q |
224 |
tgggttctttggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgt |
280 |
Q |
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| T |
9122850 |
tgggttctttggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgt |
9122794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 24524885 - 24524745
Alignment:
| Q |
150 |
tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
249 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524885 |
tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
24524786 |
T |
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| Q |
250 |
aaagatcgtcaagaatttggctagagattgtgaggatattg |
290 |
Q |
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| T |
24524785 |
aaagatcgtcaagaatttggctagagattgtgaggatattg |
24524745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 10323301 - 10323197
Alignment:
| Q |
187 |
aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga |
285 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||| |||| |
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| T |
10323301 |
aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga |
10323202 |
T |
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| Q |
286 |
tattg |
290 |
Q |
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||||| |
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| T |
10323201 |
tattg |
10323197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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